Pairwise Alignments

Query, 371 a.a., peptide chain release factor 2, programmed frameshift (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 356 a.a., bacterial peptide chain Release factor 1 (RF-1) from Caulobacter crescentus NA1000

 Score =  194 bits (492), Expect = 4e-54
 Identities = 123/335 (36%), Positives = 191/335 (57%), Gaps = 18/335 (5%)

Query: 24  RLDLAGNRHRLSEIEKQLSTPDAWNNPEKLTPVLQEKSMLEGEINRLEALETCRNDVSEW 83
           RLD   +R R  E     +T  A     ++  + +E + L      +E L     + +E 
Sbjct: 7   RLDQVLDRFREVEARMGAATDGA-----EIVKLSKEHAELRPVAEAVERLAKLSAERAEL 61

Query: 84  LLLAEEDESAEALESLEEQIIRLEQLIEETEMNLLLS--GKEDRFAALLEIHPGAGGTEA 141
            ++A + E AE +   E Q +  +  + E E+ L+L+   K++  +A+LE+  G GG EA
Sbjct: 62  DVMASDPEMAEMVRD-EIQALDEKLPVMERELALMLAPKDKDENASAILEVRAGTGGDEA 120

Query: 142 QDWAEMLLRMYLRWADTHGYKTEYLDYLDGDEAGIKSVTLRIAGPNAYGLLKGERGIHRL 201
             +A  L RMY R+A T G++ E     +G+  G K +   I G   +G LK E G+HR+
Sbjct: 121 ALFAGDLFRMYQRYAQTQGWRVEIDSISEGEMGGFKEIVASITGDGVFGRLKFESGVHRV 180

Query: 202 IRISPFDASGRRHTSFASVDVIPDVGQDIKIEIKDTDLRIDVFRSSGPGGQSVNTTSSAV 261
            R+   +A GR HTS A+V V+P+  +D++IEIK++DLRID +RSSG GGQ VN T SAV
Sbjct: 181 QRVPATEAQGRIHTSAATVAVLPE-AEDVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAV 239

Query: 262 RVTHIPTGIVAQCQNEKSQHHNKDSALQILRGRLYELELRKLE----EEKKAQYGAKDAI 317
           R+TH+PTG+V    +EKSQH N+  A++ L+ RLY+++   L+    E +K+Q G+ D  
Sbjct: 240 RITHLPTGVVV-TSSEKSQHQNRARAMKNLKARLYDMQREALDSARSEARKSQVGSGDR- 297

Query: 318 GFGSQIRTYTLQPYRLVKDHRTNTEVGDVEAVLDG 352
               +IRTY   P   V DHR N  + ++  +++G
Sbjct: 298 --SERIRTYNF-PQGRVTDHRINLTLYNLARIMEG 329