Pairwise Alignments

Query, 178 a.a., cold shock domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 186 a.a., cold-shock DNA-binding domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  115 bits (287), Expect = 6e-31
 Identities = 65/182 (35%), Positives = 98/182 (53%), Gaps = 10/182 (5%)

Query: 4   QGKIAQWNDERGFGFISPD-DGSPRVFAHISAFRSRHPLPEVGERVLYYLGPPSPKGSRA 62
           +GK+ +WNDERGFGFI P+ DG+  VF HIS+ +     P +G+ +++ L   S    +A
Sbjct: 3   RGKLIRWNDERGFGFIKPEQDGADDVFIHISSLKQMSRAPRIGDIIVFQLQTSSDGKQQA 62

Query: 63  SVVRYIDRVQRPAA-WRGRHSALDVFAQKVAALVVVMVLVVLAV--LWSQFEGESSHQRE 119
            + R      +P +  + R ++      K+   +V++ L+  AV  L    EG  S    
Sbjct: 63  GLARIEGVAIKPGSPIKARKTSTTFPLGKLLKGMVLIALIAFAVPKLAPLVEGFISKDTR 122

Query: 120 VNLPAPAKA------DPQFKCAGKTRCDQMTSCAEAKYYLRHCPGVAIDGDDDGIPCEMT 173
            ++P           +P F+C GKT C +M SCAEA +Y  +CPG  +DGD+DGIPCE  
Sbjct: 123 YSVPPMESETIVPYPEPVFRCEGKTYCSEMRSCAEATFYQNNCPGTKMDGDNDGIPCESQ 182

Query: 174 LC 175
            C
Sbjct: 183 WC 184