Pairwise Alignments

Query, 178 a.a., cold shock domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 205 a.a., cold-shock DNA-binding domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 99.0 bits (245), Expect = 5e-26
 Identities = 63/203 (31%), Positives = 96/203 (47%), Gaps = 30/203 (14%)

Query: 3   DQGKIAQWNDERGFGFISPDDGSPR-VFAHISAFRSRHPLPEVGERVLYYLGPPSP---- 57
           ++G + +WND++GFGFI P+  + + VF HISA +     P VG+ ++Y     S     
Sbjct: 2   ERGTLVRWNDDKGFGFIKPNTPNAQDVFIHISALKQMARKPVVGDEIIYQSQQQSDGKIK 61

Query: 58  ----------------KGSRASVVRYIDRVQRPAAWRGRHSALDVFAQKVAALVVVMVLV 101
                            G  + +     R Q     +  H +      ++  ++ +++LV
Sbjct: 62  AVKASIEGVAVVSGIASGRASGLANKPTRPQHRDHTQSSHYSHRRSGSRLQRMIFIIILV 121

Query: 102 VL---AVLWSQFEGESSHQREVNLPAPAK-----ADPQFKC-AGKTRCDQMTSCAEAKYY 152
            +   A+   Q    +       LPA        A P+F+C AGK  C QM+SC EAK+Y
Sbjct: 122 SIGSFAIKQYQALNATPVASFEELPAVEAQEWQPATPKFRCEAGKIHCSQMSSCQEAKFY 181

Query: 153 LRHCPGVAIDGDDDGIPCEMTLC 175
           LR+CPG  +DGD DGIPCE   C
Sbjct: 182 LRNCPGTEMDGDHDGIPCERQFC 204