Pairwise Alignments

Query, 178 a.a., cold shock domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 192 a.a., cold-shock DNA-binding protein family protein (RefSeq) from Shewanella sp. ANA-3

 Score = 94.7 bits (234), Expect = 8e-25
 Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 17/192 (8%)

Query: 3   DQGKIAQWNDERGFGFISPDDGSPRVFAHISAFRSRHPLPEVGERVLY---YLGPPSPKG 59
           ++G + +WNDE+GFGFI P+     VF HI+  +     P+VG+ +LY          K 
Sbjct: 2   ERGILVRWNDEKGFGFIQPEQQGKDVFIHITVLKHMARKPQVGDSILYRTEIQNDGKVKA 61

Query: 60  SRASV--VRYIDRVQRPAAWRGRHSALDVFAQKVAALVVVMVLVV----------LAVLW 107
            +AS+  V  +    + +  R  +      +  +  L+++  + +          +A   
Sbjct: 62  IKASIEGVAVLANTSK-SPRRNANPPSRSLSNTLLPLLLIFGIGIFGFKKYTEYEIAQAP 120

Query: 108 SQFEGESSHQREVNLPAPAKADPQFKC-AGKTRCDQMTSCAEAKYYLRHCPGVAIDGDDD 166
           +  E E++   E      +    QF+C AGKT C  M SCAEA +Y+ +CP   +DGD D
Sbjct: 121 NNTEIETTPLYEPQTQFQSAPQAQFRCEAGKTHCSHMRSCAEATFYINNCPNTQMDGDGD 180

Query: 167 GIPCEMTLCRGW 178
           GIPCE   C G+
Sbjct: 181 GIPCERQWCNGY 192