Pairwise Alignments

Query, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 624 a.a., RNA polymerase sigma factor RpoD from Xanthomonas campestris pv. campestris strain 8004

 Score =  450 bits (1157), Expect = e-131
 Identities = 280/648 (43%), Positives = 387/648 (59%), Gaps = 85/648 (13%)

Query: 1   MSNIKEIQQ--IKSLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLDIAIVD 58
           M+N +  QQ  IK LI+KG   G+LT+ EVN  LP ++  PEQIE+II + + + I + +
Sbjct: 1   MANERPAQQSDIKLLISKGLEQGYLTYAEVNDHLPDDLVDPEQIEDIISMINGMGIDVHE 60

Query: 59  SEKDGKKISMSPG-----ESEEEAPSEGGLDLSD-DEETVDYSSRSTDPVRMYLREMGSV 112
              D + + ++ G     E ++ A  E    L+  D E      R+TDPVRMY+REMG+V
Sbjct: 61  VAPDAETLLLNDGNTGNREVDDTAAEEAAAALTALDTE----GGRTTDPVRMYMREMGTV 116

Query: 113 PLLDRDGEVVIAKKIEMGEQDVLYALVEVPVAVEELVNVGEDLKQNRIKLKDVV----KT 168
            LL R+GE+ IAK+IE G   V  AL   P++ E L++  E  K+ + +L ++V      
Sbjct: 117 ELLTREGEIAIAKRIEEGLSQVQAALGTFPLSTELLLSDYEAHKEGKKRLAEIVVGFNDL 176

Query: 169 IEE------------------------------DDPSEDEMNQRQ----RVILLLEEIRT 194
           IEE                              DD +E+E          V   +E +  
Sbjct: 177 IEEADAAAAALAAAGPVAVDEDAVDEDADEDGDDDAAEEEAGPTGPDPVEVATRMENLAN 236

Query: 195 TFKKKRKVYSKLDECCTLERRVASVQREIMNYKEDIVSRLRDIKLEKTLIDRIIETVEDY 254
            + K +K Y K            +  + +   +ED+ +    +KL   L D ++  +   
Sbjct: 237 EYAKFKKAYVKY----------GAEHKNVAKAREDMAAIFTTLKLPLPLTDALVTQLRGV 286

Query: 255 VRQMHNCQRDL------------SAYILSTGKTQAEIQALFSGLEAREVSPVAASAALNM 302
           V  + + +R +              +I S    Q  ++ +   L+ ++      S+AL  
Sbjct: 287 VNGIKDHERKVLHLATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQ----KWSSALRD 342

Query: 303 TVEELFSFKEMILGKIEILSRLQDKCCH-NVNDLEEVLWRIKRGNSIAMRAKQELIRSNL 361
             +++ S ++   G IE+     +K  +  + +++++   +  G + A +AK+E++ +NL
Sbjct: 343 VKDQIVSEQQ---GSIEM-----EKANYLTLAEIKDISRAMAYGEAKARKAKKEMVEANL 394

Query: 362 RLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIA 421
           RLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY+RGYKFSTYATWWIRQAITR+IA
Sbjct: 395 RLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIA 454

Query: 422 DQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDYPIDKVKKVLKIAKEP 481
           DQARTIRIPVHMIETINKL R SR ++Q+ GR+ TPEE+A+ MD P DK++KV+KIAKEP
Sbjct: 455 DQARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPEDKIRKVMKIAKEP 514

Query: 482 ISLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNTKLGEQIASVLADLTPREEQVLRKRFG 541
           IS+ETPIGD+EDS LGDFIED    +P +   N  L E +  VLA LTPRE +VLR RFG
Sbjct: 515 ISMETPIGDDEDSHLGDFIEDTNVESPIDNTTNINLSETVRDVLAGLTPREAKVLRMRFG 574

Query: 542 IGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQTLRSYYE 589
           I   +DHTLEEVGK F+VTRERIRQIEAKALRKLRHP RS+ LRS+ +
Sbjct: 575 IDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLD 622