Pairwise Alignments

Query, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 665 a.a., RNA polymerase sigma factor RpoD from Burkholderia phytofirmans PsJN

 Score =  401 bits (1031), Expect = e-116
 Identities = 232/619 (37%), Positives = 357/619 (57%), Gaps = 42/619 (6%)

Query: 8   QQIKSLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLDIAIVDSEKDGKKIS 67
           +Q+++LI  GK  G+LT  ++N  LP        I+ I+  F+ + + + +   D + + 
Sbjct: 51  RQMRALIQLGKEQGYLTHAQINDHLPDNFAQTAAIDSIVSAFNDMGVQVYEQAPDAETLL 110

Query: 68  MSPGESEEEAPSEGGLDLSDDEETVDYSS------RSTDPVRMYLREMGSVPLLDRDGEV 121
           ++       AP+    D +D+E  V  S+      R+TDPVRMY+REMG+  LL R GE+
Sbjct: 111 LN-----SNAPAVVSDDQADEETEVALSTVDSEFGRTTDPVRMYMREMGATELLTRAGEI 165

Query: 122 VIAKKIEMGEQDVLYALVEVPVAVEELVNVGEDLKQNRIKLKDVVKTIEED--------- 172
            IAK+IE G  +++ A+   P+A+  ++   + +    +++ ++V  + ED         
Sbjct: 166 AIAKRIEDGLHEMVQAIAACPLAISAILASAQQVADGELRIDELVDGLNEDTLAAEEDST 225

Query: 173 -----------------DPSEDEMNQRQRVILLLEEIRTTFKKKRKVYSKL----DECCT 211
                            + S+D++            ++       ++++++    D+   
Sbjct: 226 GADASADVDADTDSDDDEDSDDDVGPADSSAADEARLKQLTSDCLEIFAQVGMLSDQMNA 285

Query: 212 LERRVASVQREIMNYKEDIVSRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRDLSAYILS 271
              R     +     +E+I   L  I+     IDR+   V+  V Q+   +R++   ++S
Sbjct: 286 SHTRGDVTSKAYQRAREEIQQHLAKIRFTARTIDRLCGDVQQQVAQVRAIERNILQIVVS 345

Query: 272 -TGKTQAEIQALFSGLEAREVSPVAASAALNMTVEELFSFKEMILGKIEILSRLQDKCCH 330
            +G  + +    F+G EA       A+   +     L      I  + + L  ++     
Sbjct: 346 KSGMPREKFIESFAGHEADLGWTERAARGASSYGAALERHLPAIQSEQQKLIEIEATVSL 405

Query: 331 NVNDLEEVLWRIKRGNSIAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLM 390
            +  L+E+  ++    S   +AK E+I +NLRLV+SIAKKY NRG+ FLDLIQEGNIGLM
Sbjct: 406 PLKHLKEINRQMVAAESKMRKAKSEMIEANLRLVISIAKKYVNRGMLFLDLIQEGNIGLM 465

Query: 391 KAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQE 450
           KAVDKFEY+RG+KFSTYATWW+RQA+TR++ADQARTIR+PVHMIETINKL R SR ++Q+
Sbjct: 466 KAVDKFEYRRGWKFSTYATWWVRQAVTRSLADQARTIRVPVHMIETINKLNRISREILQQ 525

Query: 451 LGRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAE 510
            G++  P  +AERM+   +KV+ +LKIAK+P+S+ETP+GD+ D++LGD IED  A +PA+
Sbjct: 526 TGQEAHPSVLAERMELSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSPAD 585

Query: 511 EVVNTKLGEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAK 570
             +   L   I   L  L+PRE +VLR R+GI  KSDHTLEEVGK F+VTRERIRQIE+K
Sbjct: 586 AAMQADLRAAIDDALDSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESK 645

Query: 571 ALRKLRHPVRSQTLRSYYE 589
           A+RKL HP R+  L+S+ +
Sbjct: 646 AMRKLMHPSRADRLKSFLD 664