Pairwise Alignments

Query, 606 a.a., [Fe] hydrogenase gamma (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 588 a.a., NADH:ubiquinone oxidoreductase subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  484 bits (1246), Expect = e-141
 Identities = 272/584 (46%), Positives = 356/584 (60%), Gaps = 22/584 (3%)

Query: 5   INGKEVRCEPGRTILEAARENGHFIPTLCEL----ADIGHAPGTCRVCLVEIWRDKEAGP 60
           I+G  +    G TILEAA + G  IPTLC +      I + P +CR+C+VE+   +   P
Sbjct: 10  IDGHFITVPEGSTILEAACKIGINIPTLCHIDLKGTCIKNNPASCRICVVEVAGRRNLAP 69

Query: 61  QIVTSCTTPVEEGMRIFTRTPEVRRMQRLQVELLLADHDHDCAACARHGDCELQDVAQFV 120
              T CT    EGM + T T  V   +++  EL+L+DH +DC  C + G+CELQ +A   
Sbjct: 70  ACATRCT----EGMVVKTSTLRVMNARKVVAELILSDHPNDCLTCPKCGNCELQTLALRF 125

Query: 121 GLTGTRHHFPDYARSRTRDVSSPSVVRDMGKCIRCLRCVAVCRNVQGVDALVVTGNGIGT 180
            +     +  + +  R R+V+S S+VR+M KCI C RC +VC +VQ V AL     G  T
Sbjct: 126 NIREMPFNGGELS-PRKREVTS-SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNT 183

Query: 181 EIGLRHNRSQSASDCVGCGQCTLVCPVGALAGRDDVERVIDYLYDPEIVTVFQFAPAVRV 240
            I    +R    S+C  CGQC  VCPVGAL  RD   R++D L DP+ + + Q APAVR 
Sbjct: 184 TIAPAFDRMMKDSECTYCGQCVAVCPVGALTERDYTNRLLDDLADPDKIVIVQTAPAVRA 243

Query: 241 GLGEEFGLPPGSSVEGQVPTALRLLGADVVLDTNFAADLVIMEEGTELLQRLR------G 294
            LGEEFGLPPG+ V G++  ALR LG D V DT+FAADL IMEEG+E+L RL        
Sbjct: 244 ALGEEFGLPPGTLVTGKMVYALRELGFDYVFDTDFAADLTIMEEGSEILNRLTRYLDGDK 303

Query: 295 GAKLPLFTSCCPGWVNFAEKHLPDILPHVSTTRSPQQCLGALAKTYLARTMNVAPERMRV 354
             +LP+ TSCCP WVNF E H PD+L   ST RSPQQ  G++AK+Y A  M +  E++ V
Sbjct: 304 SVRLPILTSCCPAWVNFFEHHFPDMLDIPSTARSPQQMFGSIAKSYWAEKMGIPREKLVV 363

Query: 355 VSLMPCTAKKEEAARPEFRRDGVRDVDAVLTTREFARLLRREGIDLAGLEPSPCDDPLMG 414
           VS+MPC AKK E  R EF+ +GV DVD  ++TRE ARL++R  I    +  SP D+P MG
Sbjct: 364 VSIMPCLAKKYECDRDEFKVNGVPDVDYSISTRELARLIKRANIGFTLVLDSPFDNP-MG 422

Query: 415 RATGAAVIFGTTGGVMEAALRTVYHVLNGKELAPVELHALRGYENVREAVVPLGEGNG-S 473
            +TGA VIFGTTGGVMEAALR+VY +  G+ L  V    +RG   VR A + L   NG  
Sbjct: 423 ESTGAGVIFGTTGGVMEAALRSVYEIYTGQPLKNVNFEQVRGLSGVRRATIDL---NGFE 479

Query: 474 VKVAVVHGLKAARQMVEAVLAGKADHVFVEVMACPGGCMDGGGQPRSKRAYNPNAQARRA 533
           +KV + HGL  AR ++E +  G  ++  +E+MACPGGC+ GGGQP      +    AR  
Sbjct: 480 LKVGIAHGLGNARHLLEDIRNGHNEYHVIEIMACPGGCIGGGGQP-LHHGNSDVLYARAN 538

Query: 534 ALFSLDAENALRQSHNNPLIGKVYESFLGEPCSNLSHRLLHTRY 577
           AL+  DA   LR+SH+NP I K+YE +LG+P    S  LLHT Y
Sbjct: 539 ALYREDANKPLRKSHDNPYIQKLYEEYLGKPLGEKSEMLLHTHY 582