Pairwise Alignments

Query, 421 a.a., periplasmic [Fe] hydrogenase, large subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 47.8 bits (112), Expect = 6e-10
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 34 KCIGCDTCSQYCPTAAIFGEMGEPHS--IPHIEA--CINCGQCLTHCPENAI 81
          KCI C  C + CP+ AI  E  E     +P  +A  CINCG C+  CP N +
Sbjct: 48 KCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVL 99



 Score = 45.4 bits (106), Expect = 3e-09
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 30  IDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCP-ENAIYEAQSWV 88
           IDE  C+ C TC   CP  AI       + I  +  C++C  CL  CP ENAI       
Sbjct: 123 IDEEVCVSCGTCENACPVDAISHNNTGLYEI-DVNLCVSCKNCLKACPVENAIVTYSE-- 179

Query: 89  PEVEKKLK 96
           PE+ +K++
Sbjct: 180 PELSEKIE 187



 Score = 43.1 bits (100), Expect = 1e-08
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 7/56 (12%)

Query: 30  IDEAKCIGCDTCSQYC--PTAAIFGEMGEPHSIPHI--EACINCGQCLTHCPENAI 81
           +DE KCIGC  C + C  P A +   + +  ++P+I  E C+ CG C   CP +AI
Sbjct: 278 VDEEKCIGCRICYRSCNVPEAIL---ISKETNLPYINPEYCVRCGLCQNACPVDAI 330



 Score = 40.8 bits (94), Expect = 7e-08
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 17/80 (21%)

Query: 31  DEAKCIGCDTCSQYCPTAAIFGEMGEPH--------SIPHI-------EACINCGQCLTH 75
           D   CI C  C + CPT  +  EMG           ++P I       E C++CG C   
Sbjct: 80  DAGSCINCGNCVESCPTNVL--EMGTLRKEAKELLWNVPKIINLLIDEEVCVSCGTCENA 137

Query: 76  CPENAIYEAQSWVPEVEKKL 95
           CP +AI    + + E++  L
Sbjct: 138 CPVDAISHNNTGLYEIDVNL 157



 Score = 35.0 bits (79), Expect = 4e-06
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 7/47 (14%)

Query: 35  CIGCDTCSQYCPTAAIFGEMGEPHSIPHIEACINCGQCLTHCPENAI 81
           CIGC  C   CP +     +        + +CI  G+CL  CP  AI
Sbjct: 221 CIGCGNCVDVCPGSIDLERL-------KVTSCIKSGKCLEVCPTTAI 260



 Score = 30.8 bits (68), Expect = 8e-05
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 13/81 (16%)

Query: 22  PDKLHFVQIDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIP---------HIEACINCGQC 72
           P  +   ++    CI    C + CPT AI   +G P  I            E CI C  C
Sbjct: 232 PGSIDLERLKVTSCIKSGKCLEVCPTTAI--RIGVPEKITKRTAECYIVDEEKCIGCRIC 289

Query: 73  LTHC--PENAIYEAQSWVPEV 91
              C  PE  +   ++ +P +
Sbjct: 290 YRSCNVPEAILISKETNLPYI 310



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 39/116 (33%)

Query: 29  QIDEAKCIGCDTCSQYCPTAAIFGEMGEPH------------------------------ 58
           +ID   C+ C  C + CP         EP                               
Sbjct: 152 EIDVNLCVSCKNCLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVIA 211

Query: 59  SIPHI--EACINCGQCLTHCPENAIYEAQSWVPEVEKKLKDGKVKCIAM-PAPAVR 111
            IP I    CI CG C+  CP +   E      +V   +K G  KC+ + P  A+R
Sbjct: 212 EIPRIVPSLCIGCGNCVDVCPGSIDLERL----KVTSCIKSG--KCLEVCPTTAIR 261



 Score = 26.2 bits (56), Expect = 0.002
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 64 EACINCGQCLTHCPENAI 81
          E CI+C  C   CP +AI
Sbjct: 47 EKCISCSACKESCPSDAI 64