Pairwise Alignments

Query, 294 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 322 a.a., Site-specific tyrosine recombinase from Xanthomonas campestris pv. campestris strain 8004

 Score =  208 bits (530), Expect = 1e-58
 Identities = 116/293 (39%), Positives = 175/293 (59%), Gaps = 5/293 (1%)

Query: 1   MDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERGCL-LAEVDEQTLFMHVVDLRRRG 59
           ++ +L HL +ER ++ +TL AY  DL  L  +   +G   +A++D   L   V    RRG
Sbjct: 31  VEPFLAHLQIERQVSAHTLDAYRRDLAALIGWASAQGSEDVAQLDSAQLRKFVTAEHRRG 90

Query: 60  MAGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPD 119
           ++ ++L R L+  R ++A+ +  G +   PA  L  PK  R LP VL  DE   ++  P 
Sbjct: 91  LSPKSLQRRLSACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEAVRLVEVPT 150

Query: 120 LSDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHHVSC 179
            +  LG RDR +LEL Y++GLR+SELCALR  D D  +G+V V GKG K+R+VPV   + 
Sbjct: 151 DAP-LGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKGGKQRLVPVGSHAV 209

Query: 180 ALVTAYLRDWRPAFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHTFRHS 239
           A + A+ RD   +    +  +F  R+G  +S++AV   +K+     G+ K + PH  RHS
Sbjct: 210 AALRAWQRD---SGGSAQTHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKHVHPHMLRHS 266

Query: 240 FATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPRTRRPR 292
           FA+H+LE   DLR VQ LLGH+DI+ T+IYTH+    L ++++A HPR +R +
Sbjct: 267 FASHILESSGDLRGVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKRKK 319



 Score = 26.6 bits (57), Expect = 8e-04
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 11/86 (12%)

Query: 208 GLSRQAVWKVVKRHVAEAGIHKDISPHTFRHSFATHLLEGGADLRSVQLLLGHADISATE 267
           G    A    V+  +A   I + +S HT             A  R +  L+G A    +E
Sbjct: 21  GPGADATLSAVEPFLAHLQIERQVSAHTL-----------DAYRRDLAALIGWASAQGSE 69

Query: 268 IYTHVQADRLRRIHNAHHPRTRRPRT 293
               + + +LR+   A H R   P++
Sbjct: 70  DVAQLDSAQLRKFVTAEHRRGLSPKS 95