Pairwise Alignments

Query, 905 a.a., DNA mismatch repair protein MutS (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 873 a.a., DNA mismatch repair protein MutS from Xanthomonas campestris pv. campestris strain 8004

 Score =  574 bits (1479), Expect = e-168
 Identities = 357/893 (39%), Positives = 501/893 (56%), Gaps = 45/893 (5%)

Query: 9   TPMFEQYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNAELKAPMCG 68
           TP+ +Q+   K DYPD LLF+RMGDFYELF+DDA   AR L I LT R  +     PM G
Sbjct: 20  TPLMKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAG 79

Query: 69  VPYHAVEGYISQLLDKGYRVAICEQIEDPKEAKGLVKRAVTRVLTPGTVIDDANLDAKEH 128
           VP HA EGY+++L+  G  VAICEQI DP  AKGLV+R V R++TPGTV D+A LD +  
Sbjct: 80  VPVHAYEGYLARLVALGESVAICEQIGDPALAKGLVERKVVRIVTPGTVTDEALLDERRD 139

Query: 129 NYLGALFWNQDAEAGAFAWVDVSTGEWSGLYSRKLAELWQWAQKMAPRELLLPEGVDTPA 188
             L A+  ++  +    AW D++ G +       +  L     ++ P ELL+P+  + P 
Sbjct: 140 TLLMAI--SRSKQGYGLAWADLAGGRFLVNEVDSVDALEAEIARLEPAELLVPDEDNWPE 197

Query: 189 MATLGTTQTVRVPARSHFDLKSGTERVMRAQGVADLGSLGLEGKPELVRACAALLAYLAQ 248
               G     R P    FD  SG  +++    + DL   G++ KP    A  ALL Y+ +
Sbjct: 198 FLR-GRVGVRRRPPWL-FDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAAGALLGYVEE 255

Query: 249 TQKQELSHLAPFKPLNLGRHLIIDEVTERNLELFHRLDGRKGPGTLWHILDRTLTPMGGR 308
           TQKQ L HL           + ++  T R+LEL  R+DG     TL  +LD T+TPMGGR
Sbjct: 256 TQKQRLPHLTSIAMEVASEAISMNAATRRHLELDTRVDGDTR-NTLLGVLDSTVTPMGGR 314

Query: 309 LLEERMHHPWREASPIRETQQVVEWLFQDDVRREALRTALDLVYDLERLSTRIFLNRATP 368
           LL   +H P R    + +    V  L       + +R A   + DLER+ TR+ L  A P
Sbjct: 315 LLRRWLHRPLRLREVLVQRHHAVGSLIDTGADTD-VREAFRALGDLERILTRVALRSARP 373

Query: 369 KDFIALRQSLSALPAVRATLERPANPEGTYPTDAETSGDTLPKPLSDMLSAWDDLADYAD 428
           +DF  LR  L+ LP VR  L    +P                  L  + +   +    A 
Sbjct: 374 RDFSTLRDGLALLPKVRTILAPLDSPR-----------------LQTLYAELGEHDATAH 416

Query: 429 LLRRALTDNPPHLVTEGGLFRPGFDPDLDELLDLAEHGEARLQELLAEEQTVSGLPKLKL 488
           LL  A+ + PP   ++GG+   G+D DLDEL  L+ + +  L +L   E+  SG+  LK+
Sbjct: 417 LLISAVAEQPPLKFSDGGVIATGYDADLDELRRLSTNADQFLIDLEQRERASSGIATLKV 476

Query: 489 GYNRVFGYFFELSRAGADSVPEHFVRRQTLANAERFTTERLKELEEKLVSATDRRKTLEY 548
           GYNRV GY+ E+S+  A+  P H+ RRQTL NAER+ TE LK  E+K++SA +R  + E 
Sbjct: 477 GYNRVHGYYIEISKGQAEKAPLHYSRRQTLTNAERYITEELKSFEDKVLSARERSLSREK 536

Query: 549 RLFQSLRDTVAEARPRVLFMADMLAHLDFWQSLADVARRNGWVRPDVHTGHDIVIREGRH 608
            L++ L D +      +   A  L+ LD     A+ A+   W +P++ +   + I  GRH
Sbjct: 537 LLYEGLLDALGGELEGLKRCASALSELDVLAGFAERAQALDWSQPELESAPCLHIERGRH 596

Query: 609 PVVEAMQGSASFVPNDLRMDEKRRLLLITGPNMAGKSTVLRQTAIICLLAQMGAFVPARE 668
           PVVEA++    F PNDL +   RR+L+ITGPNM GKST +RQ A+I LLA +G++VPA  
Sbjct: 597 PVVEAVRDQP-FEPNDLDLHPDRRMLVITGPNMGGKSTYMRQNALIVLLAHIGSYVPASR 655

Query: 669 ASIGIADRIFSRVGASDNLAQGQSTFMVEMMETARILRQASKRSLVILDEIGRGTSTFDG 728
           A IG  DRI +R+GA D+LA+GQSTFMVEM ET+ IL  A+ +SLV++DEIGRGTST+DG
Sbjct: 656 AVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDEIGRGTSTYDG 715

Query: 729 MALAWAVVEELTRRAGGGIRTLFATHYHEITSL-----EGRIPGVHNMNIAIREWNGDIV 783
           +ALA AV   L         TLFATHY E+T+L      G   G+ N+++   E    +V
Sbjct: 716 LALADAVARHLAHT--NRCYTLFATHYFELTALADASHAGGGSGIANVHLDAVEHGERLV 773

Query: 784 FLRRLVPGPADKSYGIEVARLAGVPHSVVQRARELLADLERTRDAARGTNSAPSRQTLPG 843
           F+  +  GPA++S+G++VA LAG+P + VQ+AR  LA+LE+     RG +S  +      
Sbjct: 774 FMHAVKDGPANRSFGLQVAALAGLPKAAVQQARRRLAELEQ-----RGGDSHAAEMAPAA 828

Query: 844 LDLPSKQEQVDTIVAPPPCSGVEHPLLVALRDIDTDDMTPLEALKRITEWKQL 896
           LD P   +Q     AP   +        AL+ +D D++TP +AL+ +   K L
Sbjct: 829 LDAP---QQFGLFTAPSSAA------QEALQALDPDELTPKQALEALYRLKAL 872