Pairwise Alignments

Query, 905 a.a., DNA mismatch repair protein MutS (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 863 a.a., DNA mismatch repair protein MutS from Pseudomonas fluorescens SBW25-INTG

 Score =  585 bits (1507), Expect = e-171
 Identities = 357/892 (40%), Positives = 504/892 (56%), Gaps = 57/892 (6%)

Query: 9   TPMFEQYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNAELKAPMCG 68
           TPM +QY R+K  +PD L+FYRMGDFYE+F++DA+  A+ L I LT R  +A    PMCG
Sbjct: 12  TPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSIPMCG 71

Query: 69  VPYHAVEGYISQLLDKGYRVAICEQIEDPKEAKGLVKRAVTRVLTPGTVIDDANLDAKEH 128
           +PYH++EGY+ +L+  G  V ICEQI DP  +KG V+R V R++TPGTV D+A LD +  
Sbjct: 72  IPYHSLEGYLVKLVKLGESVVICEQIGDPATSKGPVERQVVRIITPGTVSDEALLDERRD 131

Query: 129 NYLGALFWNQDAEAGAFAWVDVSTGEWSGLYSRKLAELWQWAQKMAPRELLLPEG--VDT 186
           N + A+    D      + +D+++G +S L  +    L    +++ P ELL+P+    D 
Sbjct: 132 NLIAAVLG--DERLFGLSVLDITSGNFSVLEIKGWENLLAELERINPVELLIPDDWPKDL 189

Query: 187 PAMATLGTTQTVRVPARSHFDLKSGTERVMRAQGVADLGSLGLEGKPELVRACAALLAYL 246
           PA    GT +     A   F+  S  + + +   V DL   G E     + A   LL Y 
Sbjct: 190 PAEKRRGTKRR----APWDFERDSALKSLCQQFSVQDLKGFGCETLTLAIGAAGCLLGYA 245

Query: 247 AQTQKQELSHLAPFKPLNLGRHLIIDEVTERNLELFHRLDGRKGPGTLWHILDRTLTPMG 306
            +TQ+  L HL   +   L   +++D  + RNLEL   L G +   TL  ++DR  T MG
Sbjct: 246 KETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRD-NTLQSVVDRCQTAMG 304

Query: 307 GRLLEERMHHPWREASPIRETQQVVEWLFQDDVRREALRTALDLVYDLERLSTRIFLNRA 366
            RLL   ++ P R+ + ++  Q  +  L  D  R E L+  L  + D+ER+  RI L  A
Sbjct: 305 SRLLTRWLNRPLRDLTVLQARQTSITCLL-DGYRFEKLQPQLKEIGDIERILARIGLRNA 363

Query: 367 TPKDFIALRQSLSALPAVRATLERPANPE--------GTYPTDAETSGDTLPKPLSDMLS 418
            P+D   LR +L ALP ++  +     P         GTYP                   
Sbjct: 364 RPRDLARLRDALGALPQLQVAMTELDTPHLQQLAVTAGTYP------------------- 404

Query: 419 AWDDLADYADLLRRALTDNPPHLVTEGGLFRPGFDPDLDELLDLAEHGEARLQELLAEEQ 478
                 + A LL +A+ DNPP ++ +GG+ + G+D +LDEL  L+E+    L +L A E+
Sbjct: 405 ------ELAALLEKAIIDNPPAIIRDGGVLKTGYDSELDELQSLSENAGQFLIDLEAREK 458

Query: 479 TVSGLPKLKLGYNRVFGYFFELSRAGADSVPEHFVRRQTLANAERFTTERLKELEEKLVS 538
             +GL  LK+GYNRV GYF EL    A+S P  + RRQTL  AERF T  LK  E+K +S
Sbjct: 459 ARTGLANLKVGYNRVHGYFIELPSKQAESAPIDYQRRQTLKGAERFITPELKAFEDKALS 518

Query: 539 ATDRRKTLEYRLFQSLRDTVAEARPRVLFMADMLAHLDFWQSLADVARRNGWVRPDVHTG 598
           A  R    E  L+++L + +      +   A  LA LD   +LA+ A       P   + 
Sbjct: 519 AKSRALAREKMLYEALLEDLISQLAPLQDTAAALAELDVLSNLAERALNLDLNCPRFVSE 578

Query: 599 HDIVIREGRHPVVEAMQGSASFVPNDLRMDEKRRLLLITGPNMAGKSTVLRQTAIICLLA 658
             + I +GRHPVVE +  +  FV NDL +D+  R+L+ITGPNM GKST +RQTA+I LLA
Sbjct: 579 PCMRIVQGRHPVVEQVL-TTPFVANDLSLDDDTRMLVITGPNMGGKSTYMRQTALIVLLA 637

Query: 659 QMGAFVPAREASIGIADRIFSRVGASDNLAQGQSTFMVEMMETARILRQASKRSLVILDE 718
            +G+FVPA    + + DRIF+R+G+SD+LA G+STFMVEM ETA IL  A++RSLV++DE
Sbjct: 638 HIGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDE 697

Query: 719 IGRGTSTFDGMALAWAVVEELTRRAGGGIRTLFATHYHEITSLEGRIPGVHNMNIAIREW 778
           +GRGTSTFDG++LAWA  E L         TLFATHY E+T L    P V N+++   E 
Sbjct: 698 VGRGTSTFDGLSLAWAAAERLAHLRA---YTLFATHYFELTVLPESEPLVTNVHLNATEH 754

Query: 779 NGDIVFLRRLVPGPADKSYGIEVARLAGVPHSVVQRARELLADLERTRDAARGTNSAPSR 838
           N  IVFL  ++PGPA +SYG+ VA+LAGVP+ V+ RARE L+ LE T        ++P++
Sbjct: 755 NERIVFLHHVLPGPASQSYGLAVAQLAGVPNDVITRAREHLSRLETTALPHETVVASPTK 814

Query: 839 QTLPGLDLPSKQEQVDTIVAPPPCSGVEHPLLVALRDIDTDDMTPLEALKRI 890
            T      P+   Q D   + P      HP+L  L  +D D +TP +AL+ +
Sbjct: 815 AT----SKPAAPHQSDMFASLP------HPVLDELAKLDLDGLTPRKALEML 856