Pairwise Alignments

Query, 371 a.a., permease, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 358 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  143 bits (361), Expect = 6e-39
 Identities = 92/355 (25%), Positives = 173/355 (48%), Gaps = 46/355 (12%)

Query: 57  DISTRLGSSIVFFMYDTVKILMLLVMMVYGIAWMRAGLNVERVRTYLAGKRQALGYPLAA 116
           ++ T L  +   F +  +++ +L +++ Y +  ++  +  ++V++ L+  R   GY +AA
Sbjct: 4   ELITMLKETANMFAFLALELTLLFLVISYLVGMLQEFVTPQKVQSILSS-RNGKGYLIAA 62

Query: 117 CFGAVTPFCSCSSVPLFIGFSTAGIPLGITMAFLITSPLVNEVAVVLLWGLLGWKLTLVY 176
             G++TPFCSCS++P   G   A    G  M FL  SPL+N + + L     G K+ + Y
Sbjct: 63  LLGSITPFCSCSTIPFLKGLLRARAGFGPMMVFLFASPLLNPIIIGLFVVTFGVKVAVFY 122

Query: 177 VGIGLLAGVFGGGCMSWVKAERWLQPFI-------------RQAMRPAGGGLTPFAPLPS 223
             + +   V  G  +  +  ER+++                +Q+  P+    T  AP+ S
Sbjct: 123 FVMAMGVSVIAGFTLEKLGFERYIRKEAYEQQELGASAGNNKQSSAPSSCCDTTPAPVAS 182

Query: 224 -------------------AVAPKMTWRDRHSFAKNE--TSSIFSRVWK----------- 251
                              A    +   DR S    +  T   + RVW+           
Sbjct: 183 SCCGVTSEPVTSSCCGTQPAPVASLCCDDRSSILPPQVRTEHRWLRVWRTTWKDFKQVSP 242

Query: 252 WVIGGVALGAALHGYLPQEWVEETLGKGQWWSVPAAVAVGIPLYANVTGIIPVMESLLLK 311
           ++  GV LG+ ++G++P E++    G+  W+++P A  +GIPLY     +IP+  +L+ K
Sbjct: 243 YLFVGVLLGSFIYGFIPTEFIVNYAGEATWYAIPLAAVIGIPLYIRAEAVIPLSAALVQK 302

Query: 312 GMPIGTTLALCMSAVGASLPEFIMLKQVMQWRLLALFGGLLLVLFTCAGWLLNMV 366
           GM +G+ +AL + + GAS+ E I+LK + + +++A F G++L +   +G+L  +V
Sbjct: 303 GMAMGSVMALIIGSAGASITEVILLKSIFKNQMIAAFLGVILAMAIASGFLYGLV 357