Pairwise Alignments

Query, 799 a.a., DNA ligase, NAD-dependent (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 787 a.a., NAD-dependent DNA ligase from Pseudomonas syringae pv. syringae B728a

 Score =  469 bits (1208), Expect = e-136
 Identities = 264/595 (44%), Positives = 360/595 (60%), Gaps = 29/595 (4%)

Query: 42  RAAQLRADLERHNRLYYELDTPEISDAEYDALYRELVGLETRWPALRDEASPTQRVGGEV 101
           R  +LRA+L++HN  Y+ LD P I D EYD L+ EL  LE   P L    SPTQRVG   
Sbjct: 7   RILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQRVGSAA 66

Query: 102 LEGLEKQAHTLRMYSLDNAFSRDEWGAFIQRMYNALPDAPSA----------FWCDPKMD 151
           L    +  H + M SL NAF  ++   F +R+   L D P+           + C+PK+D
Sbjct: 67  LSAFTQVRHEMPMLSLGNAFEENDMLEFDRRVTEGL-DLPAGDLFGEGGKVQYSCEPKLD 125

Query: 152 GLALEVIYENGVFTSALTRGNGEVGEVVTAAMRTVRNLPLALRGDDVPRRIEVRGEVVIA 211
           GLA+ ++Y +G      TRG+G  GE ++  +RTVRN+PL L+G   P  +EVRGEV ++
Sbjct: 126 GLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPDVLEVRGEVFMS 185

Query: 212 KADFEQLNARQSAAGGKLFANPRNAAAGSVRQLDTTVTAGRPLQFLAYGVGQVVLEGGTA 271
           KA FE+LNA Q   GGK FANPRNAAAGS+RQLD+ +TA RPL+F  YG+GQ   E    
Sbjct: 186 KAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQTSAEIAD- 244

Query: 272 PWTTHSGLMARLREWGFDTPPEGRLCASPDEVWAYYEALGARRESLAIEIDGVVAKLDDT 331
              TH G++  L++WG     E +L    +E  AYY  +G RR +L  EIDGVV K+++ 
Sbjct: 245 ---THIGVLEALKKWGMPVSRELKLANGVEECLAYYRDIGERRLTLTYEIDGVVFKVNNL 301

Query: 332 EAQEALGFTARAPRWALALKFPAMQARTRLDDIRVQVGRTGVLTPVAILEPVRVGGVEVS 391
            AQ  LGF AR PRWA+A KFPAM+  T L D+  QVGRTG +TPVA L+PV+V GV V+
Sbjct: 302 AAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMVA 361

Query: 392 RATLHNEDEIRAKGLMLGDMVLVQRAGDVIPEVVRPLVEERTGDERPFVFPENCPECDSP 451
            ATLHN DE+   GLM+GD V+++RAGDVIP+VV+ + E R  + R    P+ CP C S 
Sbjct: 362 NATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVAERRPENARAVQVPQTCPVCGSH 421

Query: 452 VVRPQ------------GEVAHRCV-NVMCPAVRRQSIIHFVSKAGLDVRGVGERWVQQL 498
           V R Q                +RCV  + C A  +Q+IIH+VS+  +D+ G+G++ ++QL
Sbjct: 422 VERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGDKTIEQL 481

Query: 499 VDGGHVTSPVGLFLLTKLDLMRFERMGPTSAANFVTALDAARTGATLVRLICALGIRHVG 558
           VD   + SP  L+ L    ++  E     S+   + A+  +R   TL R I ALGI  VG
Sbjct: 482 VDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQ-PTLARFIYALGIPDVG 540

Query: 559 EQTARTLAANFTDLDALREADAETLQQLPDIGPEVAGSIRSFFANEGNLELLERL 613
           E+TA+ LA +   L+ +++A  E L  LPD+G EVA  IRSFF +E N  +++ L
Sbjct: 541 EETAKVLARSLASLERVKQALPEVLTYLPDVGLEVAYEIRSFFEDEHNRSVIDAL 595



 Score = 75.1 bits (183), Expect = 1e-17
 Identities = 63/176 (35%), Positives = 85/176 (48%), Gaps = 7/176 (3%)

Query: 544 TLVRLICALGIRHVGEQTARTLAANFTDLDALREAD-AETLQQLPDIGPEVAGSIRSFFA 602
           TL  LI  L I  VG   A+ LA  F  L+A+  AD  +  Q LP+   + A S+R FF 
Sbjct: 618 TLEGLIDKLHIPSVGPGAAQKLADRFGTLEAIISADWLDMRQALPE---KQAKSVRDFFD 674

Query: 603 NEGNLELLERLRAIGLWPKRQDAPPASEGADAIVLPLQGLKVLFTGSLTRVGRTEAEDMA 662
           +  N E   R RAI    K       SE      LPL G   + TGSL R+ R  A++  
Sbjct: 675 DSANAE---RARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLERMSRDVAKEKL 731

Query: 663 RAAGANIASSVTKSLDLLVVGGKPGSKLEKARKLGIRVMEEADFFAMLASGVASVD 718
            + GA ++ SV+     +V G   GSKL KA +LG+ V++E      L     +VD
Sbjct: 732 ESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLIELGVAVD 787