Pairwise Alignments

Query, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 671 a.a., Excinuclease ABC subunit B from Pseudomonas fluorescens FW300-N2E2

 Score =  786 bits (2031), Expect = 0.0
 Identities = 409/673 (60%), Positives = 507/673 (75%), Gaps = 10/673 (1%)

Query: 6   FRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALILA 65
           F+L T F+P GDQPEAI  +V  +  G+  Q LLGVTGSGKTF++ANVIA   RP L+LA
Sbjct: 4   FQLVTRFQPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQIQRPTLVLA 63

Query: 66  PNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRH 125
           PNKTLAAQLY EF+A FP+NAVEYFVSYYDYYQPEAYVP+SDT+IEKD+SIND+I+++R 
Sbjct: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123

Query: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQRN 185
           +AT ALL R+D +IV +VSCIYGLGSPE Y ++V+ V+ G +    AL+ RL ++QY RN
Sbjct: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQYTRN 183

Query: 186 DFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTVIY 245
           D DF R TFRVRGDV+++ PA     A+RIE F D+++++S  DPLTGEV+  + +   Y
Sbjct: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243

Query: 246 PASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGYCN 305
           P SHYV+ R+ L+ A+  I+ EL ERL   +S N+LVEAQRLEQRT  DLEM+ ELGYCN
Sbjct: 244 PKSHYVTPRETLLDAIEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYCN 303

Query: 306 GIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLVDF 365
           GIENYSR+L GR AG PP  L DY P D LL +DESH++VPQVGAMYKGDRSRK TLV++
Sbjct: 304 GIENYSRYLSGRPAGAPPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363

Query: 366 GFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPVVE 425
           GFRLPSALDNRP+ F E+ +   QT++VSATPG +E + + G + EQ++RPTGLVDP VE
Sbjct: 364 GFRLPSALDNRPMRFDEWESVSPQTIFVSATPGNYEAEHA-GRVVEQVVRPTGLVDPQVE 422

Query: 426 VRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDTME 485
           VRP   QVDDLL+E   R A +ERVL+TTLTKRMAEDLT++L + G+ VRYLHSDIDT+E
Sbjct: 423 VRPALTQVDDLLSEISKRVALEERVLVTTLTKRMAEDLTDYLADHGVRVRYLHSDIDTVE 482

Query: 486 RMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRAAR 545
           R+ II+ LR G  DVLVGINLLREGLD+PEVSLV+ILDADKEGFLRS  SLIQT GRAAR
Sbjct: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542

Query: 546 NAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYSAA 605
           N  GR ILYAD +T SM  A+ ET RRR++Q A+N ANGI P+ + K +    D +  A 
Sbjct: 543 NLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFKDV---ADIMEGAT 599

Query: 606 SEGGKGKGRGRGRQAAPAVENVAEYGT---SPEDMAKHIQKLEREMREAAKELEFERAAT 662
             G + K R   +  A A E  A Y     SP ++ K I++LE +M + A++LEFE AA 
Sbjct: 600 VPGSRSKKR---KGMAKAAEESARYEAELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQ 656

Query: 663 LRDRIRLLRERLI 675
           LRD I  LRERL+
Sbjct: 657 LRDEIGKLRERLL 669