Pairwise Alignments

Query, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 673 a.a., Excinuclease ABC subunit B from Xanthomonas campestris pv. campestris strain 8004

 Score =  773 bits (1995), Expect = 0.0
 Identities = 389/667 (58%), Positives = 499/667 (74%), Gaps = 4/667 (0%)

Query: 6   FRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALILA 65
           F L + + P GDQP AI ++VAN   G+  Q LLGVTGSGKT+T+ANV+    +P L++A
Sbjct: 5   FELVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPTLVMA 64

Query: 66  PNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRH 125
           PNKTLAAQLY EF++ FP+NAVEYFVSYYDYYQPEAYVP+SDT+IEKDSSIN++I+++R 
Sbjct: 65  PNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIEQMRL 124

Query: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQRN 185
           +AT  LL+RRD ++VA+VS IYGLG+PE Y  L + +  G+      L+  L ++QY RN
Sbjct: 125 SATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQYTRN 184

Query: 186 DFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTVIY 245
           +F+  RG FRVRG+VL+V PA     ALRIE F  DI+ ++  DPLTGE L  + +  +Y
Sbjct: 185 EFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQRYTVY 244

Query: 246 PASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGYCN 305
           P +HY + R+  + A+  I++EL ERL +  S N+LVEAQRL QRT  DLEMM E+G+CN
Sbjct: 245 PKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEVGFCN 304

Query: 306 GIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLVDF 365
           GIENYSRHL G+A G+PP  L DY P D LL +DESH+T+PQ+GAMYKGDRSRK TLV+F
Sbjct: 305 GIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKETLVEF 364

Query: 366 GFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPVVE 425
           GFRLPSALDNRPL F E+  R  +++YVSATPG +EL  S G I E ++RPTGL+DPVVE
Sbjct: 365 GFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLIDPVVE 424

Query: 426 VRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDTME 485
           +RP   QVDDL++E   R    +RVL+TTLTKRMAE+LTE+LG  G+ VRYLHSDIDT+E
Sbjct: 425 IRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDIDTVE 484

Query: 486 RMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRAAR 545
           R+ II+ LR G+ DVLVGINLLREGLD+PEVSLV+ILDADKEGFLRSTGSLIQT GRAAR
Sbjct: 485 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIGRAAR 544

Query: 546 NAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYSAA 605
           N  G+ ILYAD +T SM+AA+DET RRRE+Q  +N  +GI P+++ + +    +     A
Sbjct: 545 NLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEGAREDA 604

Query: 606 SEGGKGKGRGRGRQAAPAVENVAEY-GTSPEDMAKHIQKLEREMREAAKELEFERAATLR 664
           +E   GKGR + RQ A   E  A+Y    P ++A  ++ LE++M + AK+LEFE AA +R
Sbjct: 605 AEKKAGKGRSKSRQVA---EEPADYRAMGPAEIAGKLKALEQKMYQHAKDLEFEAAAQIR 661

Query: 665 DRIRLLR 671
           D+I  L+
Sbjct: 662 DQILKLK 668