Pairwise Alignments

Query, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 672 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella amazonensis SB2B

 Score =  770 bits (1987), Expect = 0.0
 Identities = 392/678 (57%), Positives = 502/678 (74%), Gaps = 7/678 (1%)

Query: 1   MADTCFRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRP 60
           M++  F+L + + P GDQP AI +++  L  G+  Q LLGVTGSGKTFTVANVIA   RP
Sbjct: 1   MSEQVFQLSSHYSPAGDQPTAIAKLIDGLESGLACQTLLGVTGSGKTFTVANVIATLGRP 60

Query: 61  ALILAPNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNI 120
            +I+APNKTLAAQLY E +  FP+NAVEYFVSYYDYYQPEAYVPAS+T+IEKD+S+N +I
Sbjct: 61  TIIMAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHI 120

Query: 121 DKLRHAATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEV 180
           +++R +AT ALL RRDV+IVASVS IYGLG P+ Y ++++ +  G       ++ RL E+
Sbjct: 121 EQMRLSATKALLERRDVIIVASVSAIYGLGDPDSYMKMLLHLRQGDFMGQRDILRRLSEL 180

Query: 181 QYQRNDFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVG 240
           QY RND D  RGTFRVRG+V+++ PA     A+R+E F D+I+ ISE DPLTG+V   + 
Sbjct: 181 QYSRNDIDLQRGTFRVRGEVIDIFPADSERDAIRVELFDDEIERISEFDPLTGQVTKRLA 240

Query: 241 KTVIYPASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEE 300
           +  +YP +HYV+ R+ ++ A+  I+DEL  R +++   ++L+EAQR+ +R   D+EMM E
Sbjct: 241 RATVYPKTHYVTPREKILEAIDQIKDELRVRKQQFLDNHKLIEAQRITERVQYDVEMMTE 300

Query: 301 LGYCNGIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKS 360
           LGYC+GIENYSR+L GRA G+ P  LLDY P D L+ +DESH TVPQ+GAMYKGDRSRK+
Sbjct: 301 LGYCSGIENYSRYLSGRAEGEGPPTLLDYLPADGLMIIDESHNTVPQIGAMYKGDRSRKT 360

Query: 361 TLVDFGFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLV 420
           TLV++GFRLPSALDNRPL+F EF + + QT++VSATPGK+EL++S   IAEQ++RPTGL+
Sbjct: 361 TLVEYGFRLPSALDNRPLKFEEFESLMPQTIFVSATPGKYELEKSGDDIAEQVVRPTGLI 420

Query: 421 DPVVEVRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSD 480
           DP +EVRP   QVDDLL+E   R A +ERVL+TTLTKRMAEDLT++L   G+ VRYLHSD
Sbjct: 421 DPELEVRPVAIQVDDLLSEVAKRVAVNERVLVTTLTKRMAEDLTDYLDEHGVKVRYLHSD 480

Query: 481 IDTMERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTF 540
           IDT+ERM II+ LR G  DVLVGINLLREGLD+PEVSLV ILDADKEGFLRS  SLIQT 
Sbjct: 481 IDTVERMEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTI 540

Query: 541 GRAARNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDA 600
           GRAARN  G+VILYAD +T SM  AM ET RRR +Q  +NE +GI PR + K +    D 
Sbjct: 541 GRAARNVNGKVILYADRITDSMARAMAETERRRTKQMQFNEEHGIIPRGVVKKITDVMDV 600

Query: 601 IYSAASEGGKGKGRGRGRQAA-PAVENVAEYGTSPEDMAKHIQKLEREMREAAKELEFER 659
              +A   G  K  GR R    P++         P  +A  I  LE++M + A++LEFE+
Sbjct: 601 GERSAPSRGAVKASGRSRDVGKPSMRQ------DPHQIAVTIDALEKQMHQHARDLEFEQ 654

Query: 660 AATLRDRIRLLRERLIEA 677
           AA LRD I  LR++L+EA
Sbjct: 655 AAALRDEIHGLRQQLLEA 672