Pairwise Alignments

Query, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 733 a.a., Excinuclease ABC, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  772 bits (1994), Expect = 0.0
 Identities = 389/669 (58%), Positives = 492/669 (73%), Gaps = 21/669 (3%)

Query: 6   FRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALILA 65
           FRL ++++P GDQP+AI +++  L    RDQVLLGVTGSGKTFT+A VIA   RP LILA
Sbjct: 38  FRLASDYQPAGDQPQAIAELLRGLAAQDRDQVLLGVTGSGKTFTMAQVIAEMGRPTLILA 97

Query: 66  PNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRH 125
           PNKTLAAQLY EF+  FPDNAVEYFVSYYDYYQPEAYVP +DTYIEKDSSIN+ ID++RH
Sbjct: 98  PNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRH 157

Query: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQRN 185
           AAT ALL RRDV+IVASVSCIYG+GS E Y+R++IP++ G       L+  LVE+Q+ RN
Sbjct: 158 AATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTLPRADLLKALVELQFTRN 217

Query: 186 DFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTVIY 245
           D  F RG FRVRGD +E+ PA++ +RA R+  +GD+I+++ E DPLTGE+  S+ +  +Y
Sbjct: 218 DIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLWGDEIESVREFDPLTGEITASLDEVTVY 277

Query: 246 PASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGYCN 305
           PASH+V+ R  L +A+  I+ EL E L  +    +++EAQRLEQRT  DLEM+E  G+C 
Sbjct: 278 PASHHVTPRPALSQAVRTIKAELKETLARFYDQGKVLEAQRLEQRTTFDLEMIEATGHCK 337

Query: 306 GIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLVDF 365
            IENYSRHL GR  G PP  L +Y P+D LLFVDESH+ VPQ+G M++GD +RKS L +F
Sbjct: 338 SIENYSRHLTGRRPGDPPPTLFEYLPEDALLFVDESHVAVPQIGGMFRGDFNRKSVLAEF 397

Query: 366 GFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPVVE 425
           GFRLPS +DNRPL+F E+      +++VSATPG+WEL+R+ GV+AEQ+IRPTGLVDPV  
Sbjct: 398 GFRLPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVVAEQVIRPTGLVDPVCI 457

Query: 426 VRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDTME 485
           +RP   QVDDLL E +A AAR ERVL+TTLTKRM+EDLTE+L   G+ VRY+HSDI+T+E
Sbjct: 458 IRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLTEQGVRVRYMHSDIETLE 517

Query: 486 RMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRAAR 545
           R+ II+ LR G  DVLVGINLLREGLDIPE +LV+ILDADKEGFLRS  SLIQT GRAAR
Sbjct: 518 RIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGRAAR 577

Query: 546 NAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYS-- 603
           N  GRVILYAD +T S+  A++ET+RRR+RQQ +N A+GI P T+R  +     ++Y   
Sbjct: 578 NVGGRVILYADKMTDSLTFAIEETSRRRQRQQDYNAAHGITPETVRSRISDVLSSVYEKD 637

Query: 604 --AASEGGKGKGRGRGRQAAPAVENVAEYGTSPEDMAKHIQKLEREMREAAKELEFERAA 661
               + G  G  +  G+                  + +H+  L++ MR AA +LEFE A 
Sbjct: 638 YVTVTTGVSGDNQLVGK-----------------SLREHLADLDKRMRAAAADLEFEEAG 680

Query: 662 TLRDRIRLL 670
            LRD IR L
Sbjct: 681 RLRDEIRRL 689