Pairwise Alignments

Query, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 680 a.a., excinuclease ABC subunit B (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 1126 bits (2913), Expect = 0.0
 Identities = 565/677 (83%), Positives = 614/677 (90%), Gaps = 1/677 (0%)

Query: 1   MADTCFRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRP 60
           M  + F L T++EP GDQPEAIGQIV+N+  GV DQVLLGVTGSGKTFT+A VIA C RP
Sbjct: 1   MTQSPFILRTDYEPRGDQPEAIGQIVSNIEAGVTDQVLLGVTGSGKTFTMAQVIARCGRP 60

Query: 61  ALILAPNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNI 120
           AL+LAPNKTLAAQLYNEFR LFP+NAVEYFVSYYDYYQPEAYVP+SDTYIEKDSSINDNI
Sbjct: 61  ALVLAPNKTLAAQLYNEFRQLFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDNI 120

Query: 121 DKLRHAATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEV 180
           DKLRHAATHALLTRRDVVIVASVSCIYGLGSPEYYA+LVIPVE GQR SMDAL+TRLVEV
Sbjct: 121 DKLRHAATHALLTRRDVVIVASVSCIYGLGSPEYYAKLVIPVETGQRLSMDALITRLVEV 180

Query: 181 QYQRNDFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVG 240
           QY+RND+DFHRGTFRVRGDVLE+IPAYHHERALRIEFFGDDIDAISEIDPLTG+VL SVG
Sbjct: 181 QYERNDYDFHRGTFRVRGDVLEIIPAYHHERALRIEFFGDDIDAISEIDPLTGQVLASVG 240

Query: 241 KTVIYPASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEE 300
           KTVIYPASHYVSDRDNLVRA+SDIRDELGERLRE +  NRLVEAQRLEQRTMLDLEMMEE
Sbjct: 241 KTVIYPASHYVSDRDNLVRAISDIRDELGERLRELKGGNRLVEAQRLEQRTMLDLEMMEE 300

Query: 301 LGYCNGIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKS 360
           +GYCNG+ENYSRHLDGR AG PPSCLLDYFPDDFLLFVDESHITV QVGAMYKGDRSRKS
Sbjct: 301 MGYCNGVENYSRHLDGRKAGDPPSCLLDYFPDDFLLFVDESHITVSQVGAMYKGDRSRKS 360

Query: 361 TLVDFGFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLV 420
           TLVD+GFRLPSALDNRPLEF EFL R+NQ +YVSATPGKWELDRSQG++AEQIIRPTGLV
Sbjct: 361 TLVDYGFRLPSALDNRPLEFHEFLARLNQAIYVSATPGKWELDRSQGIVAEQIIRPTGLV 420

Query: 421 DPVVEVRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSD 480
           DP+ EVRPT+GQVDDLL ECR RAARDERVL+TTLTKRMAEDLTE+   MG++ RYLHSD
Sbjct: 421 DPITEVRPTKGQVDDLLGECRLRAARDERVLVTTLTKRMAEDLTEYFNEMGVAARYLHSD 480

Query: 481 IDTMERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTF 540
           IDTMERMAIIQALRR E DVLVGINLLREGLDIPEVSLVSILDADKEGFLRS GSLIQTF
Sbjct: 481 IDTMERMAIIQALRRKEFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSAGSLIQTF 540

Query: 541 GRAARNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDA 600
           GRAARN  GRV++YAD VT SM+AAMDETARRRERQ  +NEA+ I P TIRK+++TPFDA
Sbjct: 541 GRAARNVEGRVLMYADVVTRSMQAAMDETARRRERQTGYNEAHHIVPATIRKAVETPFDA 600

Query: 601 IYSAASEGGKGKGRGRGRQAAPAVENVAEYGTSPEDMAKHIQKLEREMREAAKELEFERA 660
           IY+ A+E    KG+GR + AA A E  A + + P ++AK IQ+LER+MREAAKELEFERA
Sbjct: 601 IYAEAAEAKGRKGKGR-KGAAQAAETFAPWSSDPHELAKQIQQLERDMREAAKELEFERA 659

Query: 661 ATLRDRIRLLRERLIEA 677
           A LRDRIRLLRE L+ A
Sbjct: 660 AELRDRIRLLREHLLGA 676