Pairwise Alignments

Query, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 693 a.a., excinuclease ABC subunit B from Herbaspirillum seropedicae SmR1

 Score =  740 bits (1910), Expect = 0.0
 Identities = 376/676 (55%), Positives = 487/676 (72%), Gaps = 12/676 (1%)

Query: 3   DTCFRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPAL 62
           D+ F+L+  F P GDQP AI ++V  +  G+  Q LLGVTGSGKT+T+AN IA   RPA+
Sbjct: 21  DSPFKLYQVFPPAGDQPAAIDKLVEGVNDGLFYQTLLGVTGSGKTYTMANTIARLGRPAI 80

Query: 63  ILAPNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDK 122
           + APNKTLAAQLY+EFR  FP NAVEYFVSYYDYYQPEAYVP  D +IEKDSSIN++I++
Sbjct: 81  VFAPNKTLAAQLYSEFREFFPHNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQ 140

Query: 123 LRHAATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQY 182
           +R + T +L+ RRDVVIVA+VS IYG+G+P  Y ++++ +    + S   ++ RL+++QY
Sbjct: 141 MRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMILTLRAKDKVSQRDVIARLIQMQY 200

Query: 183 QRNDFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKT 242
            RN+ DF RGTFRVRGD ++V PA H E A+RIE F D+ID++   DPLTG V   + + 
Sbjct: 201 TRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIETFDDEIDSLQLFDPLTGRVRQKIPRF 260

Query: 243 VIYPASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELG 302
            IYP SHYV+ R  ++RA+  I++EL ERL  ++  N+L+E QRLEQRT  D+EMM E+G
Sbjct: 261 TIYPGSHYVTPRSTVLRAIETIKEELAERLEFFRKENKLIEEQRLEQRTRFDIEMMTEIG 320

Query: 303 YCNGIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTL 362
           +  GIENYSRHL G   G PP  L+DY P D ++F+DESH+ + Q+  MY GDR+RK  L
Sbjct: 321 FTKGIENYSRHLSGAKPGDPPPTLVDYLPKDAIMFLDESHVLIGQLNGMYNGDRARKVNL 380

Query: 363 VDFGFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDP 422
           VD+GFRLPSALDNRPL+F EF  ++ QT++VSATP  +E   +  V+ EQ++RPTGLVDP
Sbjct: 381 VDYGFRLPSALDNRPLKFDEFEKKMRQTIFVSATPADYENTHADQVV-EQVVRPTGLVDP 439

Query: 423 VVEVRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDID 482
           ++ VRP   QVDDL+ E   R A+DERVL+TTLTKRMAE LTE L + G+ VRYLHSDID
Sbjct: 440 IIAVRPATTQVDDLMQEINDRIAKDERVLVTTLTKRMAEQLTEFLSDNGIKVRYLHSDID 499

Query: 483 TMERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGR 542
           T+ER+ II+ LR G  DV+VGINLLREGLDIPEVSLV+ILDADKEGFLRS  SLIQT GR
Sbjct: 500 TVERVEIIRDLRLGTFDVVVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGR 559

Query: 543 AARNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIY 602
           AARN  G  ILY D VT SM  A+ ET RRR +Q A+N ANGI P  I+K +    D ++
Sbjct: 560 AARNLNGMAILYGDVVTDSMHKAIGETERRRAKQLAFNAANGIVPTGIKKEIRELIDGVF 619

Query: 603 SAASEGGKGKGRGRGRQAAPAVENVAEY-GTSPEDMAKHIQKLEREMREAAKELEFERAA 661
           + A          + R      E    Y   S + ++K I++LE++M+E AK LEFE+AA
Sbjct: 620 NPA----------QARTELLVAEEKKNYESMSEKQISKEIKRLEKQMQEHAKNLEFEKAA 669

Query: 662 TLRDRIRLLRERLIEA 677
             RD++ LL+++L  A
Sbjct: 670 AARDQLHLLKQQLFGA 685