Pairwise Alignments

Query, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 725 a.a., excinuclease ABC, B subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  736 bits (1900), Expect = 0.0
 Identities = 377/665 (56%), Positives = 479/665 (72%), Gaps = 13/665 (1%)

Query: 6   FRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALILA 65
           FR+ T FEP GDQP AI ++   + +G RDQVLLG TG+GKTFT+A VI    RPA+ILA
Sbjct: 25  FRMATSFEPAGDQPTAIAELSEGVRNGERDQVLLGATGTGKTFTMAKVIEQTQRPAIILA 84

Query: 66  PNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRH 125
           PNKTLAAQLY EF+  FPDNAVEYFVSYYDYYQPEAYVP SDTYIEK+S IN+ ID++RH
Sbjct: 85  PNKTLAAQLYGEFKGFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESQINEQIDRMRH 144

Query: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQRN 185
           +AT ALL R DV+IVASVSCIYG+GS E Y  +   +  GQ +    +M  LV  QY+RN
Sbjct: 145 SATRALLERDDVIIVASVSCIYGIGSVETYEAMTQDLVAGQSYDQRQIMADLVAQQYRRN 204

Query: 186 DFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTVIY 245
           D  F RG+FRVRGD LE+ PA+  +RAL+  FFG+++++I+E DPLTGE   ++ +  IY
Sbjct: 205 DAGFQRGSFRVRGDSLEIWPAHMEDRALKFSFFGEELESITEFDPLTGEKADTLDRIRIY 264

Query: 246 PASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGYCN 305
             SHYV+ R  L +A+  I+ EL  RL +  +  +L+EAQRLEQRT  D+EM+E  G CN
Sbjct: 265 ANSHYVTPRPTLQQAIVSIKKELRIRLDQLVAEGKLLEAQRLEQRTNFDIEMLEATGVCN 324

Query: 306 GIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLVDF 365
           GIENYSR+L GRA G+PP  L +Y PD+ ++F DESH++VPQ+G MYKGD  RK TL + 
Sbjct: 325 GIENYSRYLTGRAPGEPPPTLFEYIPDNAIVFADESHVSVPQIGGMYKGDFRRKMTLAEH 384

Query: 366 GFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPVVE 425
           GFRLPS +DNRPL+F E+     Q+V+VSATP  WEL+++ GV  EQ+IRPTGL+DP VE
Sbjct: 385 GFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPAAWELEQAGGVFTEQVIRPTGLLDPQVE 444

Query: 426 VRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDTME 485
           +RP   QVDDLL E R   A   R L+TTLTKRMAEDLTE++   G+ VRY+HSDIDT+E
Sbjct: 445 IRPVEMQVDDLLDEVRRVTADGFRTLVTTLTKRMAEDLTEYMHEQGIKVRYMHSDIDTLE 504

Query: 486 RMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRAAR 545
           R+ I++ LR G  DVL+GINLLREGLDIPE  LV+ILDADKEGFLRS  SL+QT GRAAR
Sbjct: 505 RIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDADKEGFLRSETSLVQTIGRAAR 564

Query: 546 NAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYSAA 605
           NA GRVI+YAD +T SM  A+ ET RRR +Q A+NE +GI P T++K+++     +Y   
Sbjct: 565 NAEGRVIMYADRITGSMERALAETNRRRAKQIAYNEEHGITPETVKKNVEDVMAGLY--- 621

Query: 606 SEGGKGKGRGRGRQAAPAVENVAEYGTSPEDMAKHIQKLEREMREAAKELEFERAATLRD 665
            +G     R   +   P       +G + E +   ++ L  +MR+AA+ LEFE AA LRD
Sbjct: 622 -QGDVDMNRVTAKVEKPL------HGGNLETV---LEGLRADMRKAAENLEFEEAARLRD 671

Query: 666 RIRLL 670
            ++ L
Sbjct: 672 EVKRL 676