Pairwise Alignments

Query, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 673 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella sp. ANA-3

 Score =  765 bits (1976), Expect = 0.0
 Identities = 387/677 (57%), Positives = 498/677 (73%), Gaps = 4/677 (0%)

Query: 1   MADTCFRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRP 60
           M+++ F+L ++F P GDQP AI ++V  L  G+  Q LLGVTGSGKTFT+ANVIA   RP
Sbjct: 1   MSESVFQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAQLGRP 60

Query: 61  ALILAPNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNI 120
            +I+APNKTLAAQLY E +  FP+NAVEYFVSYYDYYQPEAYVPAS+T+IEKD+S+N +I
Sbjct: 61  TIIMAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHI 120

Query: 121 DKLRHAATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEV 180
           +++R +AT ALL R+DVV++ASVS IYGLG P+ Y ++++ +  G       ++ RL E+
Sbjct: 121 EQMRLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILKRLSEL 180

Query: 181 QYQRNDFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVG 240
           QY RND +  RGTFR RG+V+++ PA      +R+E F D+I+ +SE DPLTG+++  + 
Sbjct: 181 QYTRNDLELQRGTFRARGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKRIA 240

Query: 241 KTVIYPASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEE 300
           +T +YP +HYV+ R+ ++ A   I+ EL ER +     N+L+EAQR+ +R   D+EMM E
Sbjct: 241 RTTVYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVE 300

Query: 301 LGYCNGIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKS 360
           LGYC+GIENYSR+L GRA G+ P  LLDY P D LL +DESH+TVPQ+GAMYKGDRSRK+
Sbjct: 301 LGYCSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKT 360

Query: 361 TLVDFGFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLV 420
           TLV++GFRLPSALDNRPL+F EF   + QT+YVSATP  +ELD+S G I EQ++RPTGL+
Sbjct: 361 TLVEYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELDKSGGEIVEQVVRPTGLL 420

Query: 421 DPVVEVRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSD 480
           DP +EVRP   QVDDLL+E   R A +ERVL+TTLTKRM+EDLTE+L   G+ VRYLHSD
Sbjct: 421 DPELEVRPVSIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSD 480

Query: 481 IDTMERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTF 540
           IDT+ER+ II+ LR G+ DVLVGINLLREGLD+PEVSLV ILDADKEGFLRS  SLIQT 
Sbjct: 481 IDTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTI 540

Query: 541 GRAARNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDA 600
           GRAARN  G+VILYAD +T SM  AM ET RRRE+Q A+N  +GI P+ + K +    D 
Sbjct: 541 GRAARNVNGKVILYADRITQSMAKAMGETERRREKQHAYNLEHGIVPKGVVKRITDVMDV 600

Query: 601 IYSAASEGGKGKGRGRGRQAAPAVENVAEYGTSPEDMAKHIQKLEREMREAAKELEFERA 660
                +E G       G+ A P  +    Y      ++  I KLE++M E A+ LEFE+A
Sbjct: 601 DDGRDTEKGYSPS-SLGKVAEPKAK---RYQADAAQLSHDIDKLEKQMHEHARNLEFEQA 656

Query: 661 ATLRDRIRLLRERLIEA 677
           A LRD ++ LRE LI A
Sbjct: 657 AALRDEVKRLRELLITA 673