Pairwise Alignments

Query, 404 a.a., outer membrane transport protein, OmpP1/FadL/TodX family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 440 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Shewanella amazonensis SB2B

 Score =  117 bits (293), Expect = 7e-31
 Identities = 114/439 (25%), Positives = 190/439 (43%), Gaps = 48/439 (10%)

Query: 3   KVLLVLCLALCPLQAWAAGYGVYEWSARG--NALGGAMVARDADPSSVAYNPAAITDLEG 60
           K LL   + L   Q  AAG+ +   SA G   A+ G  V  D + S ++ NPAA+   + 
Sbjct: 13  KTLLAAAIGLASTQTLAAGFQLNSHSATGVGRAISGDAVIAD-NASVLSRNPAAMALFDN 71

Query: 61  AQIQMGATA----IAPTAKMTSNTP---GKRDAEFSDSIWGLPTFYYTQQLSDNYWFGFG 113
             + +G T     ++      + TP   G       D I  +P FYY   ++D + FG  
Sbjct: 72  TALSLGVTYADIDVSVKDVCKAGTPICFGSDTDAAEDKI--IPNFYYINPINDKWAFGVA 129

Query: 114 MFSRVGLGTD----YKDTDTWPGRYNC-------SYAAIHSVSLNPNLAMKLTDELSVAF 162
            FS  G GTD      +  T PG               + +++LN +L+ ++ ++LS+  
Sbjct: 130 AFSNFGTGTDPGALANNAVTLPGLGTIPAPVDLLGNTEVITMNLNASLSYRVNEQLSLGA 189

Query: 163 GLDATY----------LRFMYDTTISPVDVMQQIDADGWAYGLNLGARYKPYDWLAFGVA 212
           G+D  Y          L F  +  + PV ++  +DADGWA G  LGA Y+       GV+
Sbjct: 190 GVDVIYGQGTLTRKGNLPFGPNGEMVPVSLVN-VDADGWALGGILGAVYEFNADHRLGVS 248

Query: 213 WRSEMQLTVNGNVDFTQKGAVPAPAARDVRGTEPIPESITFGVMVKPFDKLSLEVDAVWT 272
           +R   +   +G+V      A       ++    P+P+        +  +K +L   A  T
Sbjct: 249 YRFSPEFKASGDVQTLVPQAQAYANFDEI--VIPLPDIFQVAGFHQLTEKFALHYTAQLT 306

Query: 273 RWSAYNTLVINYDPALYGKSSVSAEK----NWKNTWRLQFGAEYALTDSIDLRAGYVYDQ 328
            W  +  + +  +    G++S+ + +     W ++W    G  Y L+D+  LRAGY++DQ
Sbjct: 307 SWGDFKEITL--ENGTLGQTSIPSSQLKHYAWDDSWLFSIGGTYQLSDAWTLRAGYMHDQ 364

Query: 329 TPVDDAHEDYAVPCSDRQIATTGIGWKINEAWVLDASYSYLWMTDR---EYEARSGGIYD 385
             VD+     ++P SDR   T G  + ++    LD   + +   D    E  A  G +  
Sbjct: 365 GVVDEI-SSISIPDSDRNWYTLGASYALSANATLDLGVALVRGEDTQVLEQSAIIGDVIA 423

Query: 386 STREDAHAHMAGLSLTYKF 404
            TR +A  +   L   YK+
Sbjct: 424 HTRSNAVYY--SLQYNYKY 440