Pairwise Alignments

Query, 404 a.a., outer membrane transport protein, OmpP1/FadL/TodX family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 438 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Shewanella loihica PV-4

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 108/448 (24%), Positives = 184/448 (41%), Gaps = 61/448 (13%)

Query: 3   KVLLVLCLALCPLQAWAAGYGVYEWSARGNALGGAMVARDADPSSV-AYNPAAITDLEGA 61
           K +L + + L   QA AAG+ +   SA G     A  A  AD +SV + NPAA+   +  
Sbjct: 6   KTILAVAVTLASSQAMAAGFQLNSQSATGVGRAFAGDAVIADNASVLSRNPAAMALFDEK 65

Query: 62  QIQMGATAIAPTAKMTSNTPGKRDAEFSDSIWG---------------LPTFYYTQQLSD 106
           Q+ MG T       +           + DS+ G               +P FYY   ++D
Sbjct: 66  QLSMGLTYADVEVSVKD--------VYIDSLVGPIHYGHVDDAAEAKIIPNFYYVSPVND 117

Query: 107 NYWFGFGMFSRVGLGTD-----YKDTDTWPGRYN-CSYAAIHSVSLNPNLAMKLTDELSV 160
            + +G  MFS  G GTD      +  +  P   +      + +++ N + + +  D  SV
Sbjct: 118 KFAYGVAMFSNFGTGTDTTPMSQQLVNGLPAPLDLLGKTEVTTLNFNLSASYRFNDHFSV 177

Query: 161 AFGLDATYLR------FMYDTTISPVDV-MQQIDADGWAYGLNLGARYKPYDWLAFGVAW 213
             G+D  Y +       +  T    V   +  +DADG A+G  +GA Y+      FG+++
Sbjct: 178 GAGVDVIYGQGTLTRGGLVPTQAGAVQQDLVDVDADGVAFGGIIGAVYEINADHRFGMSY 237

Query: 214 RSEMQLTVNGNVDFTQKGAVPAPAARDVRGTEPIPESITFGVMVKPFDKLSLEVDAVWTR 273
           R        G+++     A    A  ++    P+P+        +  +K +L   A  T 
Sbjct: 238 RFSPDFKATGDINMYNPVAGANVAFDEI--NIPMPDIFQVAGFHQLTEKFALHYTAQLTT 295

Query: 274 WSAYNTLVINYDPALYGKSSVSAEKN-----WKNTWRLQFGAEYALTDSIDLRAGYVYDQ 328
           W  +  + +       G   V+ E +     W ++W    G  Y L     +RAGY++DQ
Sbjct: 296 WGDFKEITVT--DGTIGGVPVAPEASLKTYAWDDSWLFSVGGTYTLNQDWTVRAGYMFDQ 353

Query: 329 TPVDDAHEDYAVPCSDRQIATTGIGWKINEAWVLDASYSYLWMTD---REYEARSGG--- 382
             V +     ++P SDRQ  T G  + + +   LD   +++   D    E+ A +GG   
Sbjct: 354 GVVGEV-SSISIPDSDRQWFTAGATYNLGKHASLDFGVAFIRGEDVDLIEHSAITGGLPI 412

Query: 383 ------IYDSTREDAHAHMAGLSLTYKF 404
                 ++ +TR +A  +   +   YKF
Sbjct: 413 GPDTGMVHATTRSNATYY--SMQYNYKF 438