Pairwise Alignments

Query, 404 a.a., outer membrane transport protein, OmpP1/FadL/TodX family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 413 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  584 bits (1505), Expect = e-171
 Identities = 276/413 (66%), Positives = 327/413 (79%), Gaps = 9/413 (2%)

Query: 1   MRKVLLVLCLALC----PLQAWAAGYGVYEWSARGNALGGAMVARDADPSSVAYNPAAIT 56
           MRK L +LCL L     PL A A+GY VYEWSARG ALGGAMVARDADPSSVAYNPA IT
Sbjct: 1   MRKPLFLLCLVLVALLLPLHAHASGYAVYEWSARGTALGGAMVARDADPSSVAYNPANIT 60

Query: 57  DLEGAQIQMGATAIAPTAKMTSNTPGKRDAEFSDSIWGLPTFYYTQQLSDNYWFGFGMFS 116
           DL GAQ+Q+GATAI P A M   +  + D +FSD+IWGLPT YYTQQL+D+YWFGFG+FS
Sbjct: 61  DLPGAQVQVGATAIKPAATMDFKSASQTDRDFSDAIWGLPTAYYTQQLNDHYWFGFGVFS 120

Query: 117 RVGLGTDYKDTDTWPGRYNCSYAAIHSVSLNPNLAMKLTDELSVAFGLDATYLRFMYDTT 176
           RVGLGT+Y   D W GRYNCSYA I S++ NPNLAMK +D+ S+A G++ATYLRFMYD+T
Sbjct: 121 RVGLGTEYAGGDNWAGRYNCSYAGIQSLTFNPNLAMKFSDQFSMAVGVEATYLRFMYDST 180

Query: 177 ISPVDVMQQIDADGWAYGLNLGARYKPYDWLAFGVAWRSEMQLTVNGNVDFTQKGAVPAP 236
           +   DV Q+IDADGWAYGLN GARYKPYDWLAFG+AWRS++ L V G+VDFT+K     P
Sbjct: 181 VPLADVKQEIDADGWAYGLNAGARYKPYDWLAFGLAWRSQIDLKVTGDVDFTRKKVTSPP 240

Query: 237 AARD--VRGTEPIPESITFGVMVKPFDKLSLEVDAVWTRWSAYNTLVINYDPALYGK-SS 293
                 + GTEP+PES+TFGVMVKP D+LSLE D VWTRWSAY  L ++Y+P+L G   +
Sbjct: 241 TISQGGISGTEPLPESVTFGVMVKPIDRLSLEADVVWTRWSAYEALTMDYNPSLLGMYPT 300

Query: 294 VSAEKNWKNTWRLQFGAEYALTDSIDLRAGYVYDQTPVDDAHEDYAVPCSDRQIATTGIG 353
           VS EK+WKNTWR QFGAEYALTDS+DLRAGYVYDQ+P++D +ED+AVPCSDRQI + G G
Sbjct: 301 VSKEKDWKNTWRFQFGAEYALTDSVDLRAGYVYDQSPINDKYEDFAVPCSDRQIVSVGAG 360

Query: 354 WKINEAWVLDASYSYLWMTDREYEARSGGI--YDSTREDAHAHMAGLSLTYKF 404
           WK+++ WV+D  Y YLWM DR Y+AR      Y+  REDAHAHMAGLS+TYKF
Sbjct: 361 WKVDQNWVVDVFYGYLWMVDRHYDARPVNYINYEVEREDAHAHMAGLSVTYKF 413