Pairwise Alignments

Query, 404 a.a., outer membrane transport protein, OmpP1/FadL/TodX family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 407 a.a., membrane protein involved in aromatic hydrocarbon degradation (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  281 bits (720), Expect = 2e-80
 Identities = 165/415 (39%), Positives = 239/415 (57%), Gaps = 19/415 (4%)

Query: 1   MRKVLL--VLCLALCPLQAWAAGYGVYEWSARGNALGGAMVARDADPSSVAYNPAAITDL 58
           M +VLL  +LC+A     A AAG+ +YE+SARGNALGGAM AR ADPSS+A+NPA +T L
Sbjct: 1   MFRVLLAALLCVAAWSPFAEAAGFAMYEFSARGNALGGAMTARRADPSSIAFNPALVTQL 60

Query: 59  EGAQIQMGATAIAPTAKMTSNTPGKRDAEFSDSIWGLPTFYYTQQLSDNYWFGFGMFSRV 118
           EG Q   G T +AP  ++T++  G    +   ++W +P  Y T Q++DN + G G FSR 
Sbjct: 61  EGTQTLAGVTVVAP--QVTADVNGS-STDTESNMWTIPHAYATTQINDNLFLGVGTFSRF 117

Query: 119 GLGTDYKDTDTWPGRYNCSYAAIHSVSLNPNLAMKLTDELSVAFGLDATYLRFMYDTTIS 178
           GLGT+Y     W GR       I S+S+NP L ++  D  +  FG++A +  +     I+
Sbjct: 118 GLGTEY--PSGWAGRTELQSVNIQSMSVNPVLGVRHGD-FAFGFGVEAMWFEYDQKKAIT 174

Query: 179 PV---DVMQQIDADGWAYGLNLGARYKPYDWLAFGVAWRSEMQLTVNGNVDFTQKGAVPA 235
           P+   D+  ++  D   +GLN GA +K  D +A G ++R+ ++  + G   F + GAV  
Sbjct: 175 PMPGADIDGRVKGDATGFGLNGGAWWKATDSVALGASFRTPIKQKLEGRATFDKNGAV-L 233

Query: 236 PAA---RDVRGTEPIPESITFGVMVKPFDKLSLEVDAVWTRWSAYNTLVINY-DPALYGK 291
           P      D  G+  +P  +  GV  +P ++ S+ VD   T WS+Y+ L I Y  P   G 
Sbjct: 234 PGMFNDTDAEGSVTLPGEVRVGVAWEPDNRWSVAVDVTRTFWSSYDELRIGYGHPLASGV 293

Query: 292 SSVSAEKNWKNTWRLQFGAEYALTDSIDLRAGYVYDQTPVDDAHEDYAVPCSDRQIATTG 351
           +       W++ WRL  G EY LTD +DLRAGYVYD  PV+  H D+ VP +DRQ+ + G
Sbjct: 294 TESLKTTEWRDVWRLGLGVEYRLTDMVDLRAGYVYDCEPVNSDHLDFLVPANDRQLYSVG 353

Query: 352 IGWKINEAWVLDASYSYLWMTDREYEARS--GGIYDSTREDAHAHMAGLSLTYKF 404
           +G   +  W +D SY+YLW+  R+ E RS  G +YD    D  AH+ GLS  ++F
Sbjct: 354 VGLH-DGPWRVDVSYTYLWIKGRDGEVRSDDGTVYDVRFHDGDAHLVGLSAGWEF 407