Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1159 a.a., DNA polymerase III subunit alpha from Vibrio cholerae E7946 ATCC 55056

 Score =  899 bits (2322), Expect = 0.0
 Identities = 508/1176 (43%), Positives = 713/1176 (60%), Gaps = 47/1176 (3%)

Query: 1    MSD--FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSF 58
            MSD  F+HL  H+++S++DG  ++  L  +    GM A A+TD  NL G   FY+T  + 
Sbjct: 1    MSDPKFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNC 60

Query: 59   GIKPIIGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTEGF-HYK 117
            G+KPIIG        D T ++ EF      L LLA+NN GY NL  L+++ +  G   ++
Sbjct: 61   GVKPIIGA-------DFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQ 113

Query: 118  PRVDKELLREYSDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSN 177
            P +DK  L E+++GLI LS   +GEV R L+K          + Y + F   FYLEL   
Sbjct: 114  PVIDKAWLVEHAEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRT 173

Query: 178  GIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRF 237
            G  ++E      +++A   +LP+VATN+  ++     EAH+I + I    T++DP+R + 
Sbjct: 174  GRADEESYLHFALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKN 233

Query: 238  ETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTLDTEF 297
             + + Y +S  EM + FA +PEA+AN+  IA+ CN+ +  G+YF P +    GM ++   
Sbjct: 234  YSPKQYLRSEAEMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPTG-GMAIEDFL 292

Query: 298  QRLAEEGLKKRLE---KHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFINWAK 354
               + EGL++RLE     P+        Y +RL+ EL VI  MGFPGYFLIV +FI W+K
Sbjct: 293  VMKSREGLEERLEFLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSK 352

Query: 355  NNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRRT 414
            +N IPVGPGRGS AGSLVA++L+IT+LDP+ YDLLFERFLN ERVSMPD DVDFC  +R 
Sbjct: 353  DNDIPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRD 412

Query: 415  EVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMTIK 474
            +VI +VAE YG D+VSQI TFG M AKAV+RDVGR LG  FG  DRI+KL+P D  MT++
Sbjct: 413  QVIDHVAEMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLE 472

Query: 475  KALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLYKGK 534
            KA  AEP L  LY  D ++++L+D    LEG +R+A  HA GVVIS   ++++ P+Y   
Sbjct: 473  KAFIAEPALQELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDA 532

Query: 535  KGE-TVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDAL----DEITRQGKTPPDLDTLSLD 589
            +G   VTQFD   VE  GLVKFDFLGLRT+T++  AL      + + GK P  ++ + LD
Sbjct: 533  EGNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLD 592

Query: 590  DAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFI 649
            DA ++       T  VFQ+ES GM++ ++ L+P CF+DIIA++AL+RPGPL SGMVD FI
Sbjct: 593  DARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFI 652

Query: 650  KRKHGEVPVTYP-----VPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAM 704
             RKHG   ++YP       SL+  L+PTYG+I+YQEQVMQIAQ++  YTLGGAD+LRRAM
Sbjct: 653  DRKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAM 712

Query: 705  GKKIAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTA 764
            GKK  E MA++R  F +GA+KN +  E A +IFDL+EKFA YGFNKSHSAAYAL+SY T 
Sbjct: 713  GKKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTL 772

Query: 765  FLKVHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHE-GRIV 823
            +LK H+P EFMAA++T++M N +K++  V  CK+M + VL P++      F V + G IV
Sbjct: 773  WLKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIV 832

Query: 824  FGLGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLG 883
            +G+G IK VG+  I  I++AR +GG +  L D C R++L+KV KRVIE LI  GA D LG
Sbjct: 833  YGIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLG 892

Query: 884  CTRAGMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDD 943
              RA M+AS+D  V  A +  +     Q  +F ++ + P+       + +    PEWP+ 
Sbjct: 893  PHRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPE-----EVEQKYTQVPEWPEK 947

Query: 944  QKLRFEKEALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLKELMT 1003
             +L  E+E LG +LT HP+  Y KEL +     L EA        +  A LV   + + T
Sbjct: 948  VRLEGERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTT 1007

Query: 1004 KKGQRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLLEGTLDKKADDGNGGQGQG 1063
            K+G R+    ++D +   EV+ + E      E L+ D+ L++ G +    DD NGG    
Sbjct: 1008 KRGTRIGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQV--SFDDFNGG---- 1061

Query: 1064 GDDEEAAPRDIKIMGAKVMPLAMACCSSDEPVIVELDTRRMSADYLAGLRAILEKHK-GT 1122
                      +K+   +VM L  A       + + +   ++   +      ILE H+ GT
Sbjct: 1062 ----------LKMSAREVMDLGSAREKFARGLSISILQSQIDQQFFERFSHILEPHRAGT 1111

Query: 1123 VPVNVHMVVDESLCLLQLGPRWTVQPGPVFENDLNK 1158
            VPVNV+    ++   L LG  W V P     ++L +
Sbjct: 1112 VPVNVYYQRPDARARLTLGTEWRVTPSDTLLDELKQ 1147