Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1169 a.a., DNA polymerase III subunit alpha from Sinorhizobium meliloti 1021

 Score =  787 bits (2033), Expect = 0.0
 Identities = 455/1065 (42%), Positives = 644/1065 (60%), Gaps = 41/1065 (3%)

Query: 4    FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKPI 63
            FVHL  H+ YSLL+GA+ LK +  +A      A  I D  NLF A  F       G++PI
Sbjct: 23   FVHLRVHSAYSLLEGALPLKKIIGKAVADDQPAIGIADTNNLFAALEFSQKAADDGLQPI 82

Query: 64   IGCEVYVAATDRTDKTSEFARTRYH-------LVLLAQNNEGYHNLVRLVTRGFTEGF-H 115
            IGC++ +   D  D+     R   H       +VL+A   +GY  LV LV+R + EG  H
Sbjct: 83   IGCQLSI---DMEDEAEGERRGHAHQFVKLPAIVLIAATEDGYARLVELVSRAYLEGEGH 139

Query: 116  YKPRVDKELLREY-SDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLEL 174
             + R+ +  L    + GLIAL+   AG V   L         A  +    +F  R Y+EL
Sbjct: 140  QQTRISRSWLAAGGTTGLIALTGAGAGPVDMALKSGSPALAEARLKALIELFGDRLYVEL 199

Query: 175  QSNGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKR 234
            Q +G  ++   N ++I+LA   ++PLVATN+  +   +D +AHD L+ +     V D  R
Sbjct: 200  QRHGNYDRRHEN-RMIDLAYRLDIPLVATNEAFFPSPSDYDAHDALMAVAHNAMVSDDSR 258

Query: 235  MRFETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVY----ELPEG 290
             R  T + Y KS +EM   FA +PEA+ NT  +A  C+  +       P +    + PE 
Sbjct: 259  FRL-TPDHYLKSRKEMAALFADLPEALENTIEVARRCSFMLKTRGPILPRFTGASDDPEE 317

Query: 291  MTLD--TEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQD 348
                   E +R AEEGL++RL K         + Y +RL +EL VI  M FPGYFLIV D
Sbjct: 318  AERAEVAELRRQAEEGLEERLAKLGMAPGYKEEDYRERLAFELGVIQRMKFPGYFLIVAD 377

Query: 349  FINWAKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDF 408
            FI WAK + IPVGPGRGS AGSLVA++L IT++DP+ + LLFERFLN ERVSMPD D+DF
Sbjct: 378  FIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPMRFSLLFERFLNPERVSMPDFDIDF 437

Query: 409  CERRRTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPED 468
            C+ RR EVIRYV +KYG + V+QI TFG ++A+A +RDVGR L M +G+ D+I KL+P +
Sbjct: 438  CQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNN 497

Query: 469  --LKMTIKKALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSE 526
                  + KA+E EP L      +P + +LLD++ ++EGL RHASTHAAG+VI D+P+S+
Sbjct: 498  PANPTPLSKAIEEEPRLREEAEKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSQ 557

Query: 527  YLPLYKGKKGE-TVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDT 585
             +P+Y+  + +  VTQF+MK VE+ GLVKFDFLGL+T+T+++ A+D + ++G    DL +
Sbjct: 558  LVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAIDFVGKRG-IHIDLAS 616

Query: 586  LSLDDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMV 645
            + LDD +TYE  SRG+T GVFQVES+GMR+ L  +RP C +DIIA++ALYRPGP+ +  +
Sbjct: 617  IPLDDPKTYETLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMEN--I 674

Query: 646  DEFIKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMG 705
              +  RKHGE  +    P ++  L+ T GVIVYQEQVMQIAQ++  Y+LG ADLLRRAMG
Sbjct: 675  PVYNARKHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMG 734

Query: 706  KKIAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAF 765
            KKI   M ++R +FV GA KN + K +A+ IFDL+ KFA YGFNKSH+AAYA++SY TA+
Sbjct: 735  KKIKAEMDKQRARFVDGAVKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAIVSYQTAY 794

Query: 766  LKVHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRIVFG 825
            +K H+PVEF+AA +T +M N DK+  +      + I+V+ P+VQ S R F   + RI + 
Sbjct: 795  MKAHYPVEFLAASMTLDMSNTDKINDFRQDAMRLGIQVVAPSVQTSHRHFETGDNRIYYS 854

Query: 826  LGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCT 885
            L  +K VG+ A+  IV  R +  P+ASL D C+R++ + + +RV E+LI  GA DC G  
Sbjct: 855  LAALKGVGESAVDHIVAVRGD-RPFASLEDFCLRIDPKLLNRRVFESLIAAGAFDCFGYD 913

Query: 886  RAGMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAP---EWPD 942
            RA ++  LD ++  AQ+  + + S Q  +F           G     E+   P    W  
Sbjct: 914  RAELIGGLDRILGFAQRAQENKVSGQSDMFG---------AGAATGPEKIALPPYTPWLA 964

Query: 943  DQKLRFEKEALGFFLTSHPLQPYRKELFRLRLTPLEE--ARDMPPGAEIRTAVLVTTLKE 1000
             +KL  E + LGF+L++HPL  Y   L ++R+    +  A      A  R A  VT+ +E
Sbjct: 965  SEKLHREFQVLGFYLSAHPLDTYNNLLAKMRVQTFADFSAAVKKGAAAGRLAGTVTSKQE 1024

Query: 1001 LMTKKGQRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLL 1045
              T+ G +M      D +   E V F E   + R+LL+  + L++
Sbjct: 1025 RKTRTGNKMGIVAFSDASGQFEAVLFSEMLNQYRDLLEPGKSLVM 1069