Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1157 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella amazonensis SB2B

 Score =  884 bits (2283), Expect = 0.0
 Identities = 495/1163 (42%), Positives = 715/1163 (61%), Gaps = 50/1163 (4%)

Query: 4    FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKPI 63
            FVHL  H+++S+ DG  ++K +  +A+  GM A A+TD  NL G   FY+TC   GIKPI
Sbjct: 6    FVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDKGIKPI 65

Query: 64   IGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTEG-FHYKPRVDK 122
            IG + ++      D   EF      + +LA +NEGY NL +L+++ +  G    +  +D+
Sbjct: 66   IGADFWMLVPGFED---EFCA----VTVLAMDNEGYQNLTQLISQAYLRGQVQGRVAIDQ 118

Query: 123  ELLREYSDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSNGIKEQ 182
            E L  Y+ G++ LS    G++ + L+K       +  Q Y   FP R+++EL   G  ++
Sbjct: 119  EWLLTYNSGILLLSGAKEGDLGKALIKGNAAQAASLTQFYQKHFPDRYFIELIRTGRADE 178

Query: 183  EVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRFETREL 242
            E      ++ A    LP+VATN   +L   D EAH+I + I    T+ D +R +  + + 
Sbjct: 179  ETYLHMAVKHAAEVGLPVVATNQVVFLSPEDFEAHEIRVAIHDGFTLADNRRPKKYSEQQ 238

Query: 243  YYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTLDTEFQRLAE 302
            Y +S +EM + F+ +PEAI NT  IA+ CN+ +  G+YF P +   E  T D   +R ++
Sbjct: 239  YLRSEDEMCELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPNFPTGELSTADFLVER-SK 297

Query: 303  EGLKKRLE---KHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFINWAKNNGIP 359
            EGL++RLE     P       K Y +RL+ EL+VI  MGFPGYFLIV +FI W K+NGIP
Sbjct: 298  EGLEERLEFLFPDPAERAEKRKEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIP 357

Query: 360  VGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRRTEVIRY 419
            VGPGRGS AGSLVA++L+IT+LDP+ +DLLFERFLN ERVSMPD DVDFC  RR EVI +
Sbjct: 358  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDH 417

Query: 420  VAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMTIKKALEA 479
            VAE YG ++VSQI TFG M AKAVVRDVGR LG S+G  DRI+K+IP +  MT+ KA E 
Sbjct: 418  VAELYGREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIPPEPGMTLAKAFEV 477

Query: 480  EPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLYKGKKGET- 538
            EP L   Y  D +++ L+D++ +LEG++R+A  HA GVVI+   ++++ PLY   +G+  
Sbjct: 478  EPGLQEAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNP 537

Query: 539  VTQFDMKMVEKVGLVKFDFLGLRTMTLVQDAL----DEITRQGKTPPDLDTLSLDDAETY 594
            VTQFD   VE  GLVKFDFLGLRT+T++  AL      + + GK P D+  + LDD++++
Sbjct: 538  VTQFDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKLGKPPVDIAAIPLDDSKSF 597

Query: 595  ELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFIKRKHG 654
             +  R +T  VFQ+ES GM+  ++ L+P CF+D+IA++AL+RPGPL SGMVD FI RKHG
Sbjct: 598  SVLKRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657

Query: 655  EVPVTYP-----VPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKIA 709
               ++YP       SL+  L+PTYG+I+YQEQVMQIAQ +  YTLGGAD+LRRAMGKK  
Sbjct: 658  HEEISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKP 717

Query: 710  EAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKVH 769
            E MA++R  F  G+ KN +  E A +IFDL+EKFA YGFNKSHSAAYAL+SY T +LK H
Sbjct: 718  EEMAKQRAGFEAGSVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTH 777

Query: 770  FPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEG-RIVFGLGG 828
            FP EFMAA+++++M N DK++  V  C  M ++++ P+V     +FTV E   IV+G+G 
Sbjct: 778  FPSEFMAAVMSADMDNTDKIVTLVDECDRMGLKIIPPDVNKGLFKFTVDEDLNIVYGIGA 837

Query: 829  IKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRAG 888
            IK VG+  +  I++AR++ GP+  L D C R++L+K+ KRVIE LI  GA D LG  RA 
Sbjct: 838  IKGVGEGPVEAILEARKD-GPFTDLFDFCARIDLKKLNKRVIEKLIYSGALDSLGPHRAS 896

Query: 889  MLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQ--TAPEWPDDQKL 946
            M+A+L   +  A +  K + + Q  +F ++ ++ +       D ++Q      WPD   L
Sbjct: 897  MMATLPEAMQAADQHAKAQATGQHDMFGLLNDDQQ-------DEKQQFVECTPWPDKIWL 949

Query: 947  RFEKEALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLKELMTKKG 1006
              E+E LG +LT HP+  Y KEL       L++      G  ++ A LV   + ++TK+G
Sbjct: 950  EGERETLGLYLTGHPINQYLKELKNYTSGRLKDIHPTERGKTVKAAGLVVASRVMLTKRG 1009

Query: 1007 QRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLLEGTLDKKADDGNGGQGQGGDD 1066
             +M    ++D +A  EV+ F E F +   LL+ D+ L+ EG  +   DD +GG       
Sbjct: 1010 SKMGLLTLDDKSARLEVMLFTEAFEKFGHLLEKDRILICEG--EVSFDDFSGGN------ 1061

Query: 1067 EEAAPRDIKIMGAKVMPLAMACCSSDEPVIVELDTRRMSADYLAGLRAILEKHK-GTVPV 1125
                    ++    ++ ++ A     + + V+L +++ +   L     ++   K G VP+
Sbjct: 1062 --------RMTARNIIDISEARSHFAKALEVDLASQQATEAMLDKFFDVITPWKGGAVPL 1113

Query: 1126 NVHMVVDESLCLLQLGPRWTVQP 1148
             V+    ++   LQLG  W V P
Sbjct: 1114 IVNFSRADASGRLQLGDDWRVDP 1136