Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1151 a.a., DNA polymerase III subunit alpha from Rhodopseudomonas palustris CGA009

 Score =  816 bits (2109), Expect = 0.0
 Identities = 469/1069 (43%), Positives = 655/1069 (61%), Gaps = 33/1069 (3%)

Query: 4    FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKPI 63
            FVHLH H+ YSLL G++++  L   AK     A A+TD  N+FG   F      +GI+PI
Sbjct: 6    FVHLHVHSAYSLLKGSMKIAKLAELAKADRQPALALTDTDNMFGGLEFSDKLSGYGIQPI 65

Query: 64   IGCEVYVAATDRTDKTSEFA-RTRYHLVLLAQNNEGYHNLVRLVTRGFTEG-FHYKPRVD 121
            +G E+ +   D+   +   A  T   +VLLA   +GY +L+RL +R F E   +  P V 
Sbjct: 66   VGLELGIDFGDQDPNSRHGALATPARIVLLAAREQGYRSLMRLNSRAFLETPVNQVPHVK 125

Query: 122  KELLREYSDGLIALSACLAGEVPRVLMKQGMDAGIAT--AQEYASIFPGRFYLELQSNGI 179
             E L   +DG++AL+    G +   ++    D  +A    +     F  R Y+ELQ +G 
Sbjct: 126  LEWLEGETDGVVALTGGPDGPISLAMLT---DPALAAQRCERLQQAFGDRLYVELQRHGT 182

Query: 180  KEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRFET 239
            + +      LI+LA    LPLVATN+ H+    D EAHD LLCI +   + +  R++F T
Sbjct: 183  EAERRAEGGLIDLAYDKGLPLVATNEPHFASTEDYEAHDALLCIASGKLIAETDRIQF-T 241

Query: 240  RELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMT------- 292
             +  +K+  EM   FA +PEA+A+T  IA+ C       K   P++ +   ++       
Sbjct: 242  PDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVSDAAEAAA 301

Query: 293  -LDTEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFIN 351
                E +R AE+GL KRL  H        + Y  RL +EL VIT M + GYFLIV DFI 
Sbjct: 302  AEAAELRRQAEQGLAKRLSVHGLSPGTTEEDYNKRLAFELDVITRMKYAGYFLIVSDFIK 361

Query: 352  WAKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCER 411
            WAK +GIPVGPGRGS AGSLVA+SL IT+LDPI + LLFERFLN ERVSMPD D+DFC+ 
Sbjct: 362  WAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQD 421

Query: 412  RRTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPED--L 469
            RR EVI YV  +YG D V+QI TFG ++A+ V+RDVGR L M +G+ D++ KL+P++   
Sbjct: 422  RRGEVIEYVQHRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPAA 481

Query: 470  KMTIKKALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLP 529
             +T+K+A+E EP L     +DP + +  D++ +LEGL+RHASTHAAG+VI D+P+S+ +P
Sbjct: 482  PITLKQAIEGEPKLQAARDEDPIVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLVP 541

Query: 530  LYKGKKGE-TVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDTLSL 588
            LY+  K +  VTQF+MK VE  GLVKFDFLGL+T+T + D   ++ +Q     DL TL +
Sbjct: 542  LYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTTL-DVAVKLLKQRDIHVDLHTLPI 600

Query: 589  DDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEF 648
            DDA +Y++ +RGD  GVFQVES+GMR+ L  +RP  F+DIIA++ALYRPGP+ +  +  +
Sbjct: 601  DDAPSYQMLARGDVVGVFQVESAGMRRALIDMRPDRFEDIIALVALYRPGPMAN--IPTY 658

Query: 649  IKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKI 708
              RKHG+    Y  P LE  L+ T+GVI+YQEQVMQIAQ++  Y+LG ADLLRRAMGKKI
Sbjct: 659  CARKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGDADLLRRAMGKKI 718

Query: 709  AEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKV 768
               M ++R  FV+GA KN + K+ A+ IFDL+ KFA+YGFNKSH+AAYAL+SY+TA++K 
Sbjct: 719  RAEMDKQRAIFVEGAVKNGVAKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKA 778

Query: 769  HFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRIVFGLGG 828
            H+PVEF+AA +T E+ N DKL ++ A  + + I+V  P+V  S   F V    I + L G
Sbjct: 779  HYPVEFLAASMTLEIHNTDKLSEFRAEAQRLGIKVEAPSVNRSGATFEVGPNTIFYALAG 838

Query: 829  IKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRAG 888
            +K VG +A+++IV+AR +  P+ SL D   RVN R + KRVIE L   GA DCL   RA 
Sbjct: 839  LKGVGMQAVQQIVEARGD-RPFTSLADFSARVNPRAINKRVIECLAAAGAFDCLDSNRAR 897

Query: 889  MLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDDQKLRF 948
            +    D +VA  Q+  +   S Q  +F  + + P +          Q  P W   ++LR 
Sbjct: 898  VFGGADAIVAACQRNHEAATSGQNDMFGGLSDAPSI-------ILPQLEP-WLPAERLRR 949

Query: 949  EKEALGFFLTSHPLQPYRKELFRLRLTPLEE-ARDMPPGAEI-RTAVLVTTLKELMTKKG 1006
            E +A+GFFL+ HPL  Y   L RLR+    E  + +  GA   + A  V +  E  TK G
Sbjct: 950  EYDAIGFFLSGHPLDDYATALKRLRVQSWAEFCKAVKSGATAGKVAATVVSRMERRTKTG 1009

Query: 1007 QRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLLEGTLDKKADD 1055
             +M   G+ D T   E V F E  A+ RE+L+    +L++   + + +D
Sbjct: 1010 NKMGIIGLSDPTGHFEAVLFSEGLAQYREVLEPGAAVLMQLGAELQGED 1058