Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1477 a.a., DNA polymerase III subunit alpha from Pedobacter sp. GW460-11-11-14-LB5

 Score =  679 bits (1751), Expect = 0.0
 Identities = 410/1134 (36%), Positives = 621/1134 (54%), Gaps = 108/1134 (9%)

Query: 4    FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFG---- 59
            FVHLH HT++S+L   I + DL   A    M A A+TDH N+ GA +F     +      
Sbjct: 261  FVHLHNHTQFSVLQSTISIPDLVKAAAAQKMPAVAMTDHANMMGAFHFVNNVLNHNKAAE 320

Query: 60   -----------------IKPIIGCEVYVAAT--DRTDKTSEFARTRYHLVLLAQNNEGYH 100
                             + PI+G E +V     DRT K +      Y +VLLA+N +GYH
Sbjct: 321  AKNAAAIEAGERPTEVVMTPIVGVEFFVCNNHLDRTAKDNG-----YQMVLLAKNKKGYH 375

Query: 101  NLVRLVTRGFTEGFHYKPRVDKELLREYSDGLIALSACLAGEVPRVLMKQGMDAGIATAQ 160
            NL ++ +  +T+GF+Y PR+D+E++ +Y D +I LS  L+GE+   ++  G         
Sbjct: 376  NLAKMSSIAYTKGFYYVPRIDREVIEQYKDDIIVLSGNLSGEISNKILNMGESQAEEALI 435

Query: 161  EYASIFPGRFYLELQSNGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDIL 220
             + ++F   FY+E+  +  ++++ +NE LI LA    + LVATN+ +Y++  D  AHDIL
Sbjct: 436  WWKNMFGDDFYVEVMRHNQEDEDRVNESLIALARKHAVKLVATNNTYYINKKDANAHDIL 495

Query: 221  LCIQTQTTVDDP------KRMRFETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIE 274
            LC++       P       R     +E Y+KS +EM+  FA +PEAI N   I +   I 
Sbjct: 496  LCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSGDEMKSLFADLPEAIVNIKEIVDKIEIY 555

Query: 275  MSFGKYFFPVYELPE-----------GMTLDTEFQR-LAEEGLKKRLEKHPDRDTIDHKA 322
                +   P +++PE           G   + +F R L  EG KKR        T     
Sbjct: 556  KLAREVLLPKFDIPEEFLVAEDEADGGKRGENKFLRHLTYEGAKKRYGVLTPEVT----- 610

Query: 323  YWDRLEWELKVITDMGFPGYFLIVQDFINWAKNNGIPVGPGRGSAAGSLVAWSLRITNLD 382
              +RL++EL+ I   G+PGYFLIVQDFI  A+   + VGPGRGSAAGS+VA+ L ITN+D
Sbjct: 611  --ERLDFELQTIEKTGYPGYFLIVQDFIAEARRRDVSVGPGRGSAAGSVVAYCLWITNID 668

Query: 383  PIPYDLLFERFLNNERVSMPDIDVDFCERRRTEVIRYVAEKYGEDSVSQITTFGKMKAKA 442
            PI YDLLFERFLN +RVSMPDID+DF +  R  V+ YV  KYG   V+QI T+G M AK+
Sbjct: 669  PIKYDLLFERFLNPDRVSMPDIDIDFDDEGRGRVMEYVIGKYGSSQVAQIITYGTMAAKS 728

Query: 443  VVRDVGRALGMSFGETDRIAKLIPEDLKM---------TIKKALEAEPDLATLYRDDPQI 493
             +RD  R L +   E D+IAKLIP ++K+         T+K+AL   PD      +   +
Sbjct: 729  SIRDTARVLDLPLFEADKIAKLIP-NMKLAKIFTLDEKTLKEAL--RPDEYERVVELKNL 785

Query: 494  RKLLDVSMR-------LEGLSRHASTHAAGVVISDKPMSEYLPLYKGKKGET-VTQFDMK 545
              L D+S         LEG  R+   HA GV+I+   ++ ++P+   K  +  VTQFD  
Sbjct: 786  GGLKDLSAETIQQAQILEGSLRNTGIHACGVIITPSDITNFVPVSTAKDSDLYVTQFDNS 845

Query: 546  MVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDTLSLDDAETYELYSRGDTDGV 605
            +VE  GL+K DFLGL+T+TL++D +  + ++     D D   +DD  TYEL+ RG+T G+
Sbjct: 846  VVESAGLLKMDFLGLKTLTLIKDTVKLVKKRFGIDLDPDNFPIDDVLTYELFQRGETIGI 905

Query: 606  FQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFIKRKHGEVPVTYPVPSL 665
            FQ ES GM++Y++ L+PT FDD+IAM ALYRPGP+    +  F++RK+GE  + Y + + 
Sbjct: 906  FQYESPGMQKYMKELKPTVFDDLIAMNALYRPGPM--EYIPSFVRRKNGEEEIKYDLDAC 963

Query: 666  EACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKIAEAMAEERTKFVQGAQK 725
            E  L+ TYG+ VYQEQVM ++Q +  +T G AD+LR+AMGKK  + + + + KFV+ A +
Sbjct: 964  EEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQKDVLDKMKPKFVKQAAE 1023

Query: 726  NDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKVHFPVEFMAALLTSEMGN 785
                     +I+   E FA Y FNKSHS  YA I+Y TA+LK H+P E+MAA+L++ M +
Sbjct: 1024 KGHDATTLEKIWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNMSD 1083

Query: 786  QDKLLKYVAACKDMDIEVLRPNVQVSRREFTVH-EGRIVFGLGGIKNVGDEAIREIVDAR 844
              ++  ++  C+ M + VL P+V  S  +F+V+ +G + FG+  +K VG++A+  I++ R
Sbjct: 1084 IKQVAFFMEECRQMSVTVLGPDVNESDLKFSVNAKGEVRFGMSAVKGVGEKAVESIIEER 1143

Query: 845  EEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRA--------GMLASLDTV 896
               GPY ++ D   R N R V K+  E+ +  GA D  G  RA          +  ++ +
Sbjct: 1144 LANGPYGNVYDFAKRSNTRIVNKKAYESFVYSGAFDAFGGHRAQYFYIGPNDKMNGIEKI 1203

Query: 897  VARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDDQKLRFEKEALGFF 956
            +  A        ++Q SLF   K +  + P +        +PEW    +L++EK+A+G F
Sbjct: 1204 IKYANDFQNNESTSQASLFGGSKADLILEPSL------PVSPEWALMDRLKYEKDAIGIF 1257

Query: 957  LTSHPLQPYRKELFRL------RLTPLEEAR------------DMPPGAEIRTAVLVTTL 998
            L+ HPL  Y+ EL +       +L+ + + R            +     E+    LV T 
Sbjct: 1258 LSGHPLDNYKLELDKFCTHGVKQLSIINKVRMGDNNEDILAEFEKLKNRELCVGGLVVTA 1317

Query: 999  KELMTKKGQRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLLEGTLDKK 1052
             + +TK G+       ED   ++E+  F E F + +  L     L + G + ++
Sbjct: 1318 SQRITKTGKPFGTFVFEDYDDASEMALFGEDFLKFKSFLTEGYFLQIRGRVGER 1371