Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1151 a.a., DNA-directed DNA polymerase III PolC from Dechlorosoma suillum PS

 Score =  833 bits (2152), Expect = 0.0
 Identities = 498/1175 (42%), Positives = 691/1175 (58%), Gaps = 59/1175 (5%)

Query: 4    FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKPI 63
            FVHL  H+EYS+ DG +RL D  ARA   G  A A+TD  N FG   FY  C+  G+KP+
Sbjct: 6    FVHLRLHSEYSITDGIVRLDDAVARAIADGQPAMALTDLANAFGLVKFYNACRGKGVKPV 65

Query: 64   IGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGF-TEGFHYKPRVDK 122
             G +V++A    TD+        + L+LL +++ GY  L  L++R +  EG   +  + +
Sbjct: 66   AGADVWIANETETDRP-------FRLLLLVRSHRGYLQLCELLSRAYLAEGRRDRAEIKR 118

Query: 123  ELLREYS-DGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSNGIKE 181
                E   DGLIALS    G+V   L+    D   A A+ +++ FP  FYLE+Q  G  +
Sbjct: 119  AWFDEVGCDGLIALSGAKDGDVGDALLAGNRDLAAARAKAWSAQFPQAFYLEVQRAGHPQ 178

Query: 182  QEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRFETRE 241
            QE L     +L     LPLVAT+   +LDA D +AH+  +CI     + D +R +  T +
Sbjct: 179  QEQLVSATADLGADLELPLVATHPIQFLDADDFKAHEARVCIAEGYVLGDRRRPKTFTEQ 238

Query: 242  LYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTLDTEFQRLA 301
             Y+K+  EM + FA +PEA+ NT  IA+ CN+ ++ GK F P +  P+G++LD      A
Sbjct: 239  QYFKTQAEMAELFADLPEALENTLEIAKRCNLTLTLGKNFLPQFPTPDGISLDQHLINEA 298

Query: 302  EEGLKKRLE---KHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFINWAKNNGI 358
            + GL+KRLE     P+        Y +RLE E K I  MGFPGYFLIV DFINW K+NG+
Sbjct: 299  KAGLEKRLELLFPDPEERQRRRPEYDERLEIETKTIVQMGFPGYFLIVADFINWGKHNGV 358

Query: 359  PVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRRTEVIR 418
            PVGPGRGS AGSLVA+SL IT+LDP+ Y LLFERFLN ERVSMPD D+DFC+  R  VI 
Sbjct: 359  PVGPGRGSGAGSLVAYSLGITDLDPLQYALLFERFLNPERVSMPDFDIDFCQDNRWRVIE 418

Query: 419  YVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLK--MTIKKA 476
            YV  KYG D+VSQI TFG M +KAV+RDVGR L + +   D ++KLIP +    +++ +A
Sbjct: 419  YVRHKYGVDAVSQIATFGTMSSKAVIRDVGRVLDLPYNFCDSLSKLIPVEANKPVSLAQA 478

Query: 477  LEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLYKGKKG 536
            LE EP L     ++ ++ +L +++M+LE L+R+   HA GV+I+   ++++ PLY     
Sbjct: 479  LEMEPQLKEKMEEEEEVAELFELAMKLEDLTRNVGMHAGGVLIAPGKLTDFCPLYAQPGS 538

Query: 537  ETV-TQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDTLSLDDAETYE 595
            ++V +Q+D   VEKVGLVKFDFLGLR +T+++ A++ + R      DL +L   D   Y+
Sbjct: 539  DSVVSQYDKDDVEKVGLVKFDFLGLRNLTIIELAVEYVERLTGEKLDLLSLPFTDPAAYQ 598

Query: 596  LYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFIKRKHGE 655
            +    +T  +FQVES GM++ L+ L P  F+DIIA+LALYRPGPLGSGMVD+FI RK G+
Sbjct: 599  ILKDANTTAIFQVESEGMKKLLKKLAPDRFEDIIAVLALYRPGPLGSGMVDDFILRKKGQ 658

Query: 656  VPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKIAEAMAEE 715
              + Y  P L+ CL PTYGVIVYQEQVMQI+QI+G YTLGGAD+LRRAMGKK AE MA+ 
Sbjct: 659  QKIDYFHPDLKGCLDPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKAEEMAKH 718

Query: 716  RTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKVHFPVEFM 775
            R    +GA+K       A ++FDLM KFAEYGFNKSH+AAYA+++Y+TA+LK H    FM
Sbjct: 719  RETIAEGAKKKGYDPALAEQLFDLMTKFAEYGFNKSHTAAYAMVTYHTAWLKAHHCSAFM 778

Query: 776  AALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRIV-FGLGGIKNVGD 834
            AA ++S+M N D +  +        I+VL P+V  S   F   +G+ + +GLG +K  G 
Sbjct: 779  AATMSSDMDNTDTVKIFYEDTVKNGIKVLPPDVNHSDYRFVPVDGKTIRYGLGAVKGTGQ 838

Query: 835  EAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCT--RAGMLAS 892
            +A+  I+ AR EGGP+  L D C+RV+ R V +R IE LI+ GA D L  +  RA ++AS
Sbjct: 839  QAVECILAARAEGGPFKDLFDFCLRVDKRLVNRRTIEALIRAGAFDTLDPSRDRAQLIAS 898

Query: 893  LDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPE------WPDDQKL 946
            +   +  A +   ER+++Q  LF M         G G D   + AP+      W D Q+L
Sbjct: 899  VSIAMEAADQ--AERNAHQGGLFEMF--------GSGDDAVAE-APQYVSVRPWSDKQRL 947

Query: 947  RFEKEALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRT-AVLVTTLKELMTKK 1005
              EK ALGFF + HP    R E  R    PL     + P  E +T A +V  L+  MT +
Sbjct: 948  LEEKTALGFFYSGHPFDSIRSEAKRFAGRPLSA---LAPAREPQTLAGVVMDLRVKMTSR 1004

Query: 1006 GQRMAFAGVEDLTA-SAEVVFFPEPFAEARELLKSDQPLLLEGTLDKKADDGNGGQGQGG 1064
            G RM    ++D +  S EV  + E F   R  LK D+PL++EG + K  DD   G     
Sbjct: 1005 G-RMGIIILDDGSCPSLEVTVYSEVFDAHRNKLKVDEPLIIEGKVSK--DDFRDGLRIVA 1061

Query: 1065 DDEEAAPRDIKIMGAKVMPLAMACCSSDEPVIVELDTRRMSADYLAGLRAILEKHKGTVP 1124
            ++    P + +   A+ + L+M           + D R++  + L   R      +G  P
Sbjct: 1062 ENLYTLP-EARTRFARQLRLSMN---------GQADARKLQ-ELLTPFRM-----EGGCP 1105

Query: 1125 VNVHMVVDESLCLLQLGPRWTVQPGPVFENDLNKW 1159
            V +     E+ C L LG    V+P       L  W
Sbjct: 1106 VRIAYRNGEAQCELILGEGTRVRPDDDLLQTLQDW 1140