Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1184 a.a., Probable DNA polymerase III (alpha chain) DnaE1 (DNA nucleotidyltransferase) from Mycobacterium tuberculosis H37Rv

 Score =  713 bits (1841), Expect = 0.0
 Identities = 429/1194 (35%), Positives = 649/1194 (54%), Gaps = 63/1194 (5%)

Query: 2    SDFVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIK 61
            S FVHLH HTEYS+LDGA ++  + A  +  GM A  +TDHGN+FGA+ FY +    GIK
Sbjct: 8    SSFVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIK 67

Query: 62   PIIGCEVYVAATDRTD-----------KTSEFARTRY--HLVLLAQNNEGYHNLVRLVTR 108
            PIIG E Y+A   R D           K  + + +    HL ++A+N  G  NL +L + 
Sbjct: 68   PIIGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSH 127

Query: 109  GFTEGFHYK-PRVDKELLREYSDGLIALSACLAGEVP-RVLMKQGMDAGIATAQEYASIF 166
               EG   K  R+D EL+ E+++G+I  + C +GEV  R+ + Q  +A  A A+    + 
Sbjct: 128  ASFEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVG 187

Query: 167  PGRFYLELQSNGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQ 226
            P  ++LEL  +G+  +  + + L+E+    N+P +ATNDCHY+       H+ LLC+QT 
Sbjct: 188  PDNYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTG 247

Query: 227  TTVDDPKRMRFETRELYYKSPEEMEKAFA-HVPEAIANTGRIAEMCN--IEMSFGKYFFP 283
             T+ DP R +F+    Y KS  EM + +   VP A  +T  IAE      ++   +   P
Sbjct: 248  KTLSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMP 307

Query: 284  VYELPEGMTLDTEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYF 343
            V+ +P+G    +  +   + GL++R    P         Y +R  +E+ VI   GFP YF
Sbjct: 308  VFPVPDGHDQASWLRHEVDAGLRRRFPAGPP------DGYRERAAYEIDVICSKGFPSYF 361

Query: 344  LIVQDFINWAKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPD 403
            LIV D I++A++ GI VGPGRGSAAGSLVA++L IT++DPIP+ LLFERFLN ER SMPD
Sbjct: 362  LIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERTSMPD 421

Query: 404  IDVDFCERRRTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRA-LGM-SFGETDRI 461
            ID+DF +RRR E++RY A+K+G D V+Q+ TFG +K KA ++D  R   G   F   DRI
Sbjct: 422  IDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAIADRI 481

Query: 462  AKLIP-----EDLKMT-----IKKALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHAS 511
             K +P     +D+ ++       +  +   ++  L   DP +R +   +  LEGL R+A 
Sbjct: 482  TKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETDPDVRTIYQTARGLEGLIRNAG 541

Query: 512  THAAGVVISDKPMSEYLPLYKGKK-GETVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDAL 570
             HA  V++S +P++E +PL+K  + G  +T +D    E +GL+K DFLGLR +T++ DA+
Sbjct: 542  VHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDFLGLRNLTIIGDAI 601

Query: 571  DEITRQGKTPPDLDTLSLDDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIA 630
            D +        DL+++ LDD  TYEL  RGDT GVFQ++   MR  LR ++PT F+D++A
Sbjct: 602  DNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRDLLRRMQPTGFEDVVA 661

Query: 631  MLALYRPGPLGSGMVDEFIKRKHGEVPVTYPVPSLEACLQP----TYGVIVYQEQVMQIA 686
            ++ALYRPGP+G    +++  RK+    +    P LE  L+     TYG+IVYQEQ+M+IA
Sbjct: 662  VIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQEQIMRIA 721

Query: 687  QIVGSYTLGGADLLRRAMGKKIAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEY 746
            Q V SY+L  AD+LR+AMGKK  E + +E   F  G Q N         ++D +  FA+Y
Sbjct: 722  QKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPAAIKALWDTILPFADY 781

Query: 747  GFNKSHSAAYALISYYTAFLKVHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRP 806
             FNKSH+A Y ++SY+TA+LK ++P E+MA LLTS   ++DK   Y+A C+ + I VL P
Sbjct: 782  AFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKLGITVLPP 841

Query: 807  NVQVSRREFTVHEGRIVFGLGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVT 866
            +V  S   F      I +GLG ++NVG   +  ++  R + G +    D   ++++    
Sbjct: 842  DVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKFTDFSDYLNKIDISACN 901

Query: 867  KRVIENLIKGGACDCLGCTRAGMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCP 926
            K+V E+LIK GA D LG  R G+       V       K     Q  LF    +      
Sbjct: 902  KKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALGQFDLFGSNDDGTGTAD 961

Query: 927  GIGFDCEEQTAPEWPDDQKLRFEKEALGFFLTSHPLQPYRKELFRLRLTPLEEARD--MP 984
             + F  +     EW D  KL  E+E LG +++ HPL      L     T +    D  +P
Sbjct: 962  PV-FTIKVPD-DEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQVDTAIPAILDGDVP 1019

Query: 985  PGAEIRTAVLVTTLKELMTKKGQRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLL 1044
              A++R   ++ ++   + K G   A A +EDLT   EV+FFP  ++     +  D  +L
Sbjct: 1020 NDAQVRVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSSYGADIVDDAVVL 1079

Query: 1045 LEGTLDKKADDGNGGQGQGGDDEEAAPRDIKIMGAKVMPLAMACCSSDEPVIVELDTRRM 1104
            +   +  + D                   I ++   +     +    + P+ V L TR+ 
Sbjct: 1080 VNAKVAVRDDR------------------IALIANDLTVPDFSNAEVERPLAVSLPTRQC 1121

Query: 1105 SADYLAGLRAILEKHKGTVPVNVHMVVDESLCLLQLGPRWTVQPGPVFENDLNK 1158
            + D ++ L+ +L +H GT  V++ ++  + +  L L     V P P    DL +
Sbjct: 1122 TFDKVSALKQVLARHPGTSQVHLRLISGDRITTLALDQSLRVTPSPALMGDLKE 1175