Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1173 a.a., DNA polymerase III, alpha subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 1915 bits (4962), Expect = 0.0
 Identities = 940/1172 (80%), Positives = 1038/1172 (88%), Gaps = 11/1172 (0%)

Query: 1    MSDFVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGI 60
            MSDFVHLHCHTEYSLLDGAIRLKDL A+A D+GM AAAITDHGNL+GA YFY TCK FGI
Sbjct: 1    MSDFVHLHCHTEYSLLDGAIRLKDLCAKAVDFGMPAAAITDHGNLYGAVYFYNTCKQFGI 60

Query: 61   KPIIGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTEGFHYKPRV 120
            KPIIGCEVYVA  D TDKTSE AR R+HLVLLA++NEGYHNLV+LV+ GF  GFHYKPRV
Sbjct: 61   KPIIGCEVYVA-NDHTDKTSELARVRHHLVLLARDNEGYHNLVKLVSHGFLHGFHYKPRV 119

Query: 121  DKELLREYSDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSNGIK 180
            D +LLR+YS G+ ALSACLAG+VPR L++ GMD  I  A+EY +I+PG FYLELQSNG+K
Sbjct: 120  DMDLLRQYSGGITALSACLAGQVPRALLRSGMDDAIRIAREYEAIYPGNFYLELQSNGLK 179

Query: 181  EQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRFETR 240
            EQ+ LNEKLIELA HT LPLVATNDCHYL+A+DVEAHD+LLCIQTQ  VDD +RMRFET+
Sbjct: 180  EQDELNEKLIELADHTGLPLVATNDCHYLEASDVEAHDVLLCIQTQAKVDDERRMRFETK 239

Query: 241  ELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTLDTEFQRL 300
            ELYYKSPEEM KAFAHVP+A+ANTGRIAE C ++  FGKY FPVY LPEGMTL+ EF+RL
Sbjct: 240  ELYYKSPEEMAKAFAHVPDAVANTGRIAEQCAVKFEFGKYVFPVYALPEGMTLEDEFRRL 299

Query: 301  AEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFINWAKNNGIPV 360
            + EGLK+RLE+HP+RDTIDH  YW RLE EL VI  MGFPGYFLIVQDFINWAK+NGIPV
Sbjct: 300  SREGLKRRLERHPNRDTIDHDLYWKRLELELDVIGQMGFPGYFLIVQDFINWAKDNGIPV 359

Query: 361  GPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRRTEVIRYV 420
            GPGRGSAAGSLVAWSLRITNLDPIPY+LLFERFLN ERVSMPDIDVDFCERRRTEVIRYV
Sbjct: 360  GPGRGSAAGSLVAWSLRITNLDPIPYNLLFERFLNIERVSMPDIDVDFCERRRTEVIRYV 419

Query: 421  AEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMTIKKALEAE 480
             EKYGED V+QITTFGKMKAKAVVRDVGRALGM+F ETDRIAKL+PEDLKMT+KKA++AE
Sbjct: 420  GEKYGEDMVAQITTFGKMKAKAVVRDVGRALGMTFAETDRIAKLVPEDLKMTVKKAIDAE 479

Query: 481  PDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLYKGKKGETVT 540
            PDLA LY+ DPQIRKLLDVSMRLEGLSRHASTHAAGVV+SD+PM EYLPLY+GKKGE VT
Sbjct: 480  PDLAALYKTDPQIRKLLDVSMRLEGLSRHASTHAAGVVVSDRPMREYLPLYRGKKGEIVT 539

Query: 541  QFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDTLSLDDAETYELYSRG 600
            QFDMKMVEKVGLVKFDFLGLRTMTLVQD+LDEI RQGKTPPDLDTL+LDDAETYELYSRG
Sbjct: 540  QFDMKMVEKVGLVKFDFLGLRTMTLVQDSLDEIARQGKTPPDLDTLALDDAETYELYSRG 599

Query: 601  DTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFIKRKHGEVPVTY 660
            DTDG+FQVESSGMRQYLRML+P+CFDD+IAMLALYRPGPLGSGMVDEFIKRKHGEVPVTY
Sbjct: 600  DTDGIFQVESSGMRQYLRMLKPSCFDDVIAMLALYRPGPLGSGMVDEFIKRKHGEVPVTY 659

Query: 661  PVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKIAEAMAEERTKFV 720
            P+PSLE CL+ TYGVIVYQEQVMQIAQI   YTLGGADLLRRAMGKK AE M ++R KFV
Sbjct: 660  PLPSLEDCLRDTYGVIVYQEQVMQIAQIAAGYTLGGADLLRRAMGKKNAEEMGQQRIKFV 719

Query: 721  QGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKVHFPVEFMAALLT 780
            +GAQKN +PK  A+EIFDLMEKFAEYGFNKSHSAAYALISYYTA+LKVHFP EFMAALLT
Sbjct: 720  EGAQKNGVPKATADEIFDLMEKFAEYGFNKSHSAAYALISYYTAYLKVHFPTEFMAALLT 779

Query: 781  SEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRIVFGLGGIKNVGDEAIREI 840
            SEMGNQDKLLKYVAACKDM I VL+PNVQ SRREFTVHEG IVFGLGGIKNVGDEAIREI
Sbjct: 780  SEMGNQDKLLKYVAACKDMGIAVLQPNVQASRREFTVHEGAIVFGLGGIKNVGDEAIREI 839

Query: 841  VDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRAGMLASLDTVVARA 900
            VDAREEGG +ASLLD+C+RVNLRKVTKRV+E+LIKGGACDCLGCTRAGMLA+LD VV++A
Sbjct: 840  VDAREEGGVFASLLDLCMRVNLRKVTKRVLESLIKGGACDCLGCTRAGMLAALDNVVSKA 899

Query: 901  QKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDDQKLRFEKEALGFFLTSH 960
            QK+LK+++SNQVSLFTM+ EEP VCPGIGFDCEEQ A EW DDQKLRFEKEALGFFLTSH
Sbjct: 900  QKRLKDKESNQVSLFTMVPEEPAVCPGIGFDCEEQQAQEWDDDQKLRFEKEALGFFLTSH 959

Query: 961  PLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLKELMTKKGQRMAFAGVEDLTAS 1020
            PLQPYRKELFRLRLTPLEE RDM PG  ++TAVLVT +KE MTKKG RMAF  VEDLTAS
Sbjct: 960  PLQPYRKELFRLRLTPLEETRDMAPGMSLKTAVLVTGIKEHMTKKGARMAFLQVEDLTAS 1019

Query: 1021 AEVVFFPEPFAEARELLKSDQPLLLEGTLDKKADDGNGGQGQGGD----------DEEAA 1070
             E VFFPEP+AE RELLKSDQPLLLE T+ K+ +D  G  G GGD          D++  
Sbjct: 1020 GECVFFPEPYAEFRELLKSDQPLLLEATISKQQNDDGGRNGGGGDGMSGSAGMTEDDDDT 1079

Query: 1071 PRDIKIMGAKVMPLAMACCSSDEPVIVELDTRRMSADYLAGLRAILEKHKGTVPVNVHMV 1130
            PR+IK++G KV+PLA AC +SD+PV +++   R+    LA LRAILE+H+G VPVNV +V
Sbjct: 1080 PREIKLLGDKVIPLARACGASDQPVTIDMPLPRVEPASLAALRAILERHRGPVPVNVRLV 1139

Query: 1131 VDESLCLLQLGPRWTVQPGPVFENDLNKWTHG 1162
            VDES CLLQ GP+W VQPGP FE D+  WT G
Sbjct: 1140 VDESECLLQFGPQWMVQPGPAFETDIAHWTEG 1171