Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1189 a.a., DNA polymerase III subunit alpha from Dyella japonica UNC79MFTsu3.2

 Score =  891 bits (2302), Expect = 0.0
 Identities = 505/1092 (46%), Positives = 677/1092 (61%), Gaps = 51/1092 (4%)

Query: 4    FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKPI 63
            F HLH H+EYSL+D  IR+K L       G+ A A+TD  N+F    FY  C + GIKPI
Sbjct: 5    FAHLHLHSEYSLVDSTIRIKALVDACVREGIPAVALTDETNMFALVKFYKACSAAGIKPI 64

Query: 64   IGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTEGFHY-KPRVDK 122
             GC+++++  D    +         + L+ QN +GY NL RLV+R + EG    KP  D 
Sbjct: 65   GGCDLWLSMPDDPRPS--------RVTLICQNRDGYLNLSRLVSRVWREGQGSGKPMADA 116

Query: 123  ELLR-EYSDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSNGIKE 181
              L    ++GLIAL      EV R+ + QG+ A  A  + +A +F  R YLEL   G + 
Sbjct: 117  AWLTPSATEGLIALVG-RENEVARLAVNQGVAAAAARLRPFARLFQDRLYLELTRCGREG 175

Query: 182  QEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRFETRE 241
            +E  N   + LA   +LP++A+ND  +L   D E+H+  +CI     + DPKR R  + +
Sbjct: 176  EETWNAAALALAAELDLPVIASNDVRFLRQDDFESHEARVCIHQGRVLADPKRPRDYSDQ 235

Query: 242  LYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTLDTEFQRLA 301
             Y K+P +M + FA +PEA+ NT  +A+ C +E++FG Y+ P + +PEG  L +  + L+
Sbjct: 236  QYLKTPTQMAELFADIPEALENTVELAKRCTLELNFGTYYLPNFPVPEGHDLASYIRELS 295

Query: 302  EEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFINWAKNNGIPVG 361
             EGLK+RL  +P       + Y  RL+ EL VI +MGFPGYFLIV DFINW K NGIPVG
Sbjct: 296  HEGLKERLASNPLAPGYTLEDYVARLDRELDVIIEMGFPGYFLIVADFINWGKQNGIPVG 355

Query: 362  PGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRRTEVIRYVA 421
            PGRGS AGSLVAW L+IT+LDP+P++LLFERFLN ERVSMPD D+DFC  RR EVI YVA
Sbjct: 356  PGRGSGAGSLVAWVLKITDLDPLPFNLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYVA 415

Query: 422  EKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIP-EDLKMTIKKAL--- 477
             KYG D VSQI T+G M AKAV+RD GR LGM +   D+IAKLIP   L +T+  AL   
Sbjct: 416  RKYGRDHVSQIITYGSMAAKAVLRDSGRVLGMGYNAVDKIAKLIPARPLDLTLSCALGRS 475

Query: 478  ---EAEPD-----LATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLP 529
               + EPD        LY  D + + L+D+++ LE L+R+A  HA GVVI  KP++E+ P
Sbjct: 476  EKAKKEPDRVVKEFCDLYDQDEEAKTLIDLALSLENLTRNAGKHAGGVVIGPKPLTEFAP 535

Query: 530  LY-KGKKGETVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQ----GKTPPDLD 584
            LY +   G  VTQ+D   VE VGLVKFDFLGLRT+T++  A+  I  +    G+ P D+ 
Sbjct: 536  LYCEAGGGGVVTQYDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINARRAASGEEPLDIA 595

Query: 585  TLSLDDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGM 644
             L LDDA TY+L  +  T  VFQ+ESSGM++ L+  R   F+DI+A++ALYRPGP+   +
Sbjct: 596  ALPLDDAATYKLLQQARTVAVFQLESSGMQRMLKDARADRFEDIVALVALYRPGPM--DL 653

Query: 645  VDEFIKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAM 704
            +  F+ RKHG   V YP P +E  L+ TYG++VYQEQVMQ+AQIVG Y+LGGADLLRRAM
Sbjct: 654  IPSFVARKHGREEVQYPDPRVEPILKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAM 713

Query: 705  GKKIAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTA 764
            GKK  E MA+ER KF +GA K+ +  EKA+EIFDLMEKFA YGFNKSH+AAYAL+SY TA
Sbjct: 714  GKKKLEEMAKERAKFREGAAKDGLSGEKADEIFDLMEKFAGYGFNKSHAAAYALVSYQTA 773

Query: 765  FLKVHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRIV- 823
            +LK H+P EFMAA ++S+M N DK + ++   K + + VL P+V  S   F   E +++ 
Sbjct: 774  WLKAHYPAEFMAATISSDMDNTDKAVTFIDESKAIGLTVLPPDVNASEFMFVAVEPKVIR 833

Query: 824  FGLGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLG 883
            +GLG IK VG  A   I + RE GGPY  L D C RV+  K+ +RV+E LI  GA D L 
Sbjct: 834  YGLGAIKGVGQGACESIAEERERGGPYKDLADFCRRVDSTKLNRRVLEALILSGALDALA 893

Query: 884  CTRAGMLASLDTVVARAQKKLKERDSNQVSLFTMI---KEEPKVCPGIGFDCEEQTAPEW 940
             TRA ++  L   +  A++ L+++ S Q  +F      K    V P +  D    TAPEW
Sbjct: 894  PTRASLMLQLPDAIKAAEQHLRDKQSGQNDMFGAAMSDKSGGTVAPVVQIDL--PTAPEW 951

Query: 941  PDDQKLRFEKEALGFFLTSHPLQPYRKELFRLRLTPLEEARD--MPPGAE---------- 988
            P +QKL+ E++ LG +L+ HP  P+R+EL +L   PL E  D   PP             
Sbjct: 952  PLEQKLQGERDTLGHYLSGHPTDPWREELQQLSTCPLGEIADRYQPPRPRKGDDDNRFRR 1011

Query: 989  -IRTAVLVTTLKELMTKKGQRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLLEG 1047
               T   V  +   + K+G+  AF  +ED T   EV FF E + +   LL  D+ L++EG
Sbjct: 1012 GPDTPWTVAGMVTAIRKRGESDAFVRLEDGTGIIEVSFFGELYQQVAPLLTRDEILVVEG 1071

Query: 1048 TLDKKADDGNGG 1059
             L  + DD +GG
Sbjct: 1072 GL--RIDDFSGG 1081