Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1164 a.a., DNA polymerase III, alpha subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  764 bits (1974), Expect = 0.0
 Identities = 466/1078 (43%), Positives = 641/1078 (59%), Gaps = 48/1078 (4%)

Query: 4    FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKPI 63
            F+HL  HTEYSLL+GA+RLK L        M A AITD  N+F A          GI+PI
Sbjct: 7    FIHLRLHTEYSLLEGAMRLKKLPDLVAAAEMPAIAITDTNNMFAALEASEALSKAGIQPI 66

Query: 64   IGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTEGFHYKPRVDKE 123
            IGC+V VA         E  R    +VLLAQ   GY NL+ L T  + +     P++  E
Sbjct: 67   IGCQVDVAFDPAAP--GERPRAPAPVVLLAQTEAGYENLMALNTCLYVDKGGQLPQITVE 124

Query: 124  LLREYSDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSN-GIKEQ 182
             L      LI L+    G + R L         A     A IF  R Y+EL  + G    
Sbjct: 125  ELAANGSDLICLTGGPRGPLGRFLSAGQRPKAQALMARLAEIFGDRLYVELHRHPGDPLC 184

Query: 183  EVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRFETREL 242
                   ++LA   NLPLVATND ++ D    EAHD L+CI     VD     R  T + 
Sbjct: 185  AETEPGFLDLAYDMNLPLVATNDVYFPDPGMYEAHDALICIAEGAYVDQQAPRRRLTDQH 244

Query: 243  YYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTLDTEFQRLAE 302
            Y+KS  EM   FA +PEA+ NT  IA  C  +        P +   E      E +R + 
Sbjct: 245  YFKSQTEMATLFADLPEALENTIEIARRCAFKAFKRDPILPRFAEDEV----EELRRQSR 300

Query: 303  EGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFINWAKNNGIPVGP 362
            EGLK RL   P    ++   Y  RLE+EL +I  MGFPGYFLIV DFI WAK+ GIPVGP
Sbjct: 301  EGLKARLAVIPHAAPVEE--YEKRLEFELDIIEGMGFPGYFLIVADFIKWAKDRGIPVGP 358

Query: 363  GRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRRTEVIRYVAE 422
            GRGS AGSLVA++L IT+LDP+ Y LLFERFLN ER+SMPD D+DFC  RR EVI YV E
Sbjct: 359  GRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERISMPDFDIDFCMDRREEVIHYVQE 418

Query: 423  KYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIP-EDLK-MTIKKALEAE 480
            KYG D V QI TFG + +KA VRDVGR L M +G+ DR++K+IP E +K ++I+KAL+ E
Sbjct: 419  KYGRDKVGQIITFGALLSKAAVRDVGRVLQMPYGQVDRLSKMIPVEGVKPVSIEKALKDE 478

Query: 481  PDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLYKGKKGE-TV 539
            P LA   + +  + +LL   M++EGL R+ASTHAAGVVI D+P+ + +PLY+  + +   
Sbjct: 479  PRLAEEAKAEEVVERLLKYGMQVEGLLRNASTHAAGVVIGDRPLDKLVPLYQDPRSDMPA 538

Query: 540  TQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGK-----------------TPPD 582
            TQF+MK VE+ GLVKFDFLGL+T+T++++A+  I   G+                 T  D
Sbjct: 539  TQFNMKWVEQAGLVKFDFLGLKTLTVIENAVKLIRATGRDLHVAADGTELYSPAPGTEND 598

Query: 583  LDTLSLDDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGS 642
            ++ + LDD  +Y+LY+   T  VFQVES+GM   LR ++PTC +DIIA++ALYRPGP+ +
Sbjct: 599  INAIPLDDEASYKLYASAKTVAVFQVESTGMMDALRRMKPTCIEDIIALVALYRPGPMEN 658

Query: 643  GMVDEFIKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRR 702
              + ++ + K+G        P+++  L  T G+IVYQEQVMQIAQ +  Y+LGGAD+LRR
Sbjct: 659  --IPKYCEVKNGLSERDLLHPTVDHILDETQGIIVYQEQVMQIAQEMAGYSLGGADMLRR 716

Query: 703  AMGKKIAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYY 762
            AMGKKI EAM  ER KF+ GA +N + K+KA E++ L++KFA YGFNKSH+AAYA++SY 
Sbjct: 717  AMGKKIQEAMDAERPKFLAGAAENGVDKDKALEVWHLLDKFANYGFNKSHAAAYAVVSYQ 776

Query: 763  TAFLKVHFPVEFMAALLTSEMGNQDKLLKYVAAC-KDMDIEVLRPNVQVSRREFTVHEGR 821
            TA+LK + PVEFMA ++  ++   DKL  Y     + + +E++ P V  SR  F+V EG+
Sbjct: 777  TAWLKANHPVEFMAGVMNCDIHLTDKLAVYAEEVRRGLGLEIVPPCVNRSRASFSVAEGK 836

Query: 822  IVFGLGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDC 881
            +V+GLG +KNVG +A+  +V  R +  P+A+L D+  RV+L++V KR +E L + GA D 
Sbjct: 837  LVYGLGALKNVGADAMELVVTGRGD-KPFATLFDLARRVDLKRVGKRPLEMLARAGAFDQ 895

Query: 882  LGCTRAGMLASLDTVVARAQKKLKERDSNQVSLFTMIKE---EPKVCPGIGFDCEEQTAP 938
            L   R  +  SLD +VA +    ++R S QVSLF    E   EP++ P     C+     
Sbjct: 896  LDPNRRRVFQSLDGLVAYSAAIHEQRASAQVSLFGEAGEDLPEPRILP-----CD----- 945

Query: 939  EWPDDQKLRFEKEALGFFLTSHPLQPYRKELFRLRLTPLEE-ARDMPPGAEI-RTAVLVT 996
            +W   ++L  E +A+GF+L+ HPL  Y   L R  +  LE  AR +  GA + + A  + 
Sbjct: 946  DWLPAERLAEEHKAIGFYLSGHPLDDYMGALKRKGVVTLEALARKVETGAAVAKIAGTIA 1005

Query: 997  TLKELMTKKGQRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLLEGTLDKKAD 1054
              +E  + +G R AF    D T   EV  F +   + R+ L++ + ++++     +AD
Sbjct: 1006 GRQERKSARGNRFAFVQASDPTGLYEVTVFSDTLEKVRDHLETGKNVVMQVEATLEAD 1063