Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1172 a.a., DNA polymerase III subunit alpha from Ralstonia sp. UNC404CL21Col

 Score =  806 bits (2081), Expect = 0.0
 Identities = 486/1190 (40%), Positives = 695/1190 (58%), Gaps = 90/1190 (7%)

Query: 4    FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKPI 63
            FVHL  H+EYS++DG +RL D    A   GM A A+TD  N FG   FY   +  G+KPI
Sbjct: 6    FVHLRLHSEYSVVDGNVRLDDAVKAAAKDGMGALALTDLANAFGLVRFYKEARGKGVKPI 65

Query: 64   IGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTEGFHYKPRVDKE 123
            +G +V++   D  DK +        L+LL ++ +GY NL +L+ R +    H   R   E
Sbjct: 66   VGADVWITNHDERDKPTR-------LLLLVRDKQGYLNLCQLLARAWLSNQH---RGRAE 115

Query: 124  LLREYSD-----------GLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYL 172
            +  E+ D           GL+ALS  +AG++   L           A  ++ +FPG FY+
Sbjct: 116  IAPEWFDEPGVENAPLATGLLALSGAMAGDIGMALANGNDALARKLATHWSRVFPGAFYI 175

Query: 173  ELQSNGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDP 232
            ELQ  G    E   ++ ++LA    LP+VAT+   ++   D  AH+   CI     + +P
Sbjct: 176  ELQRAGHAGTEAYIQQAVKLASAMQLPVVATHPVQFMTPDDFTAHEARTCIAEGELLANP 235

Query: 233  KRMRFETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMT 292
            +R R  T E Y+K+ +EM   FA +P A+AN  +IA+ CN+++  GK   P++  P+GM+
Sbjct: 236  RRARRFTTEQYFKTQDEMCALFADIPSALANAVQIAQRCNLKLELGKPKLPLFPTPDGMS 295

Query: 293  LDTEFQRLAEEGLKKRLEK-HPDRDTIDHKA--YWDRLEWELKVITDMGFPGYFLIVQDF 349
            LD    +LA+EGL+KR+E   PD    + K   Y+ RLE+E   I  MGFPGYFLIV DF
Sbjct: 296  LDDYLVQLAKEGLEKRMEVLFPDEAVRESKRAEYYARLEFETGTIIKMGFPGYFLIVADF 355

Query: 350  INWAKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFC 409
            INWAKNNG+PVGPGRGS AGSLVA++L IT+LDP+ Y+LLFERFLN ERVSMPD D+DFC
Sbjct: 356  INWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFC 415

Query: 410  ERRRTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIP--E 467
            +  R  VI+YV EKYG+D+VSQI TFG M AKA VRDVGR L + +   D +AKLIP   
Sbjct: 416  QHGRDRVIQYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKP 475

Query: 468  DLKMTIKKALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEY 527
               +T+++A + EP LA    ++ ++++LL+++ R+EG++R+   HA GV+I+   ++++
Sbjct: 476  GKLVTLEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDF 535

Query: 528  LPLYK--GKKGETVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDT 585
             PLY   G+    V+Q+D   VE VGLVKFDFLGL T+T++  A   I     +  D + 
Sbjct: 536  CPLYTQGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSKADWNC 595

Query: 586  --LSLDDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSG 643
              + L D + +++    +T  VFQ+ES GM+  L+  +P  F+DIIA++ALYRPGP+   
Sbjct: 596  SHIPLTDKKAFDILKTANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPM--D 653

Query: 644  MVDEFIKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRA 703
            ++  F  RKHG   V YP P +E  L+ TYG++VYQEQVMQ+AQIVG Y+LGGADLLRRA
Sbjct: 654  LIPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRA 713

Query: 704  MGKKIAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYT 763
            MGKK  E MA+ R  F  GA K+ +  EKA+EIFDLMEKFA YGFNKSH+AAYAL++YYT
Sbjct: 714  MGKKKPEEMAQHRELFRAGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYT 773

Query: 764  AFLKVHFPVEFMAALLTSEMGNQDKL-LKYVAACKDMDIEVLRPNVQVSRREFTVHEGRI 822
            A+LK H P EFMAA ++  M + DK+ + Y  A     + +L P++  S+  F   + + 
Sbjct: 774  AWLKAHHPAEFMAANMSLAMDDTDKVKILYDDARGKNGLTILPPDINASQYRFAPTDAKT 833

Query: 823  V-FGLGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDC 881
            + +GLGG+K  G  AI +I+ ARE+ GP+  L D C RV+ R+V +R IE L++ GA D 
Sbjct: 834  IRYGLGGVKGSGQGAIEDILRARED-GPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDS 892

Query: 882  LGCTRAGMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQ-----T 936
            L   RA +LAS+   +  A++K     +NQVSLF ++          G D E+       
Sbjct: 893  LNANRAQLLASIGLAMEAAEQKAAA--ANQVSLFDLMS---------GDDAEQHRPELVD 941

Query: 937  APEWPDDQKLRFEKEALGFFLTSHPLQPYRKELFRLRLTPL----EEARDMPPG------ 986
             P W   +KL+ EK+ALGF+L+ H    YR E+ R   T L     E  D   G      
Sbjct: 942  EPAWTTKRKLQEEKQALGFYLSGHLFDEYRDEVRRFARTTLADLAREVTDKGNGGGYGNR 1001

Query: 987  -AEIRT-AVLVTTLKELMTKKGQRMAFAGVEDLTAS--AEVVFFPEPFAEARELLKSDQP 1042
             A  +T A ++   +  MT++G +M    ++D +AS   EV  F E F   R L K D+ 
Sbjct: 1002 DARNKTVAGVIVGQRTQMTQRG-KMLIVMLDDGSASEATEVTVFNEVFEANRALFKEDEV 1060

Query: 1043 LLLEGTLDKKADDGNGGQGQGGDDEEAAPRDIKIMGAKVMPLAMACCSSDEPVIVELDTR 1102
            L+++G+   + D   GG              +++    VM +  A       + + ++  
Sbjct: 1061 LIVQGS--ARHDMFTGG--------------VRVTAESVMDMTQARAKFARAIRLSMNGD 1104

Query: 1103 RMSADYLAGLRAILEKHKGT----VPVNVHMVVDESLCLLQLGPRWTVQP 1148
              +A     LR +L  H       V V ++ V +++ C   LG  W + P
Sbjct: 1105 STAAK----LRDLLSPHVAADGNGVSVRINYVCEQARCEAVLGDAWRIVP 1150