Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1192 a.a., DNA polymerase III subunit alpha from Burkholderia phytofirmans PsJN

 Score =  828 bits (2138), Expect = 0.0
 Identities = 491/1139 (43%), Positives = 686/1139 (60%), Gaps = 64/1139 (5%)

Query: 1    MSD--FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSF 58
            MSD  FVHL  H+E+S+ DG +RL D+   A   G  A A+TD GN FG   FY   +  
Sbjct: 4    MSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAKDGQGALALTDLGNAFGLVRFYKEARGK 63

Query: 59   GIKPIIGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTEGFHYKP 118
            G+KPI GC+V++   D  DK S        L+LL ++  GY NL  L+++       Y+ 
Sbjct: 64   GVKPIAGCDVWITNPDDRDKPSR-------LLLLVKDRRGYLNLCELLSKASLTN-QYRG 115

Query: 119  RVDKE---LLREYSDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQ 175
            R + E   L     +GL+ALS    G+V   L     +A    A  +A +FPG FY+ELQ
Sbjct: 116  RAEVEAGWLESGLGEGLLALSGAQQGDVGLALAAGNEEAAKRNALHWAKVFPGGFYIELQ 175

Query: 176  SNGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRM 235
             +G    E   ++ + LA    LP+VAT+   ++   D  AH+  +CI     + +P+R 
Sbjct: 176  RSGQPGGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRS 235

Query: 236  RFETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTLDT 295
            +  T E Y+++ EEM   FA +P A+AN+  IA+ CN+ +  GK   P++  P+GM+LD 
Sbjct: 236  KRFTSEQYFRTQEEMAALFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDD 295

Query: 296  EFQRLAEEGLKKRLEK-HPD--RDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFINW 352
               +L++EGL+KRLE+ +PD        + Y+ RLE+E   I  MGFPGYFLIV DFINW
Sbjct: 296  YLVQLSKEGLEKRLEQLYPDAAEREAQRETYYARLEFECGTIIKMGFPGYFLIVADFINW 355

Query: 353  AKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERR 412
            AKNNG+PVGPGRGS AGSLVA++L +T+LDP+ Y+LLFERFLN ERVSMPD D+DFC+  
Sbjct: 356  AKNNGVPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHG 415

Query: 413  RTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIP--EDLK 470
            R  VI+YV EKYG D+VSQI TFG M AKA VRD+GR L + +  TD IAKLIP      
Sbjct: 416  RDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKH 475

Query: 471  MTIKKALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPL 530
            +TI  A++ EP L   + ++ ++ +LL+++ R+EGL+R+   HA GV+I+   ++++ PL
Sbjct: 476  VTIADAMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPL 535

Query: 531  Y-KGKKGETVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPD--LDTLS 587
            Y +G +   V+Q+D   VE VGLVKFDFLGL T+T++  A   I R   +  D  L  + 
Sbjct: 536  YTQGDESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWSLGQVP 595

Query: 588  LDDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDE 647
            LDD  ++ +  + +T  VFQ+ES GM+  L+  +P  F+DIIA++ALYRPGP+   ++  
Sbjct: 596  LDDPASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPM--DLIPS 653

Query: 648  FIKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKK 707
            F  RKHG   V YP P +E+ L+ TYG++VYQEQVMQ+AQI+G Y+LGGADLLRRAMGKK
Sbjct: 654  FCARKHGREVVEYPDPRVESVLRETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKK 713

Query: 708  IAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLK 767
             AE MAE R  F QGA KN +  EKA+EIFDLMEKFA YGFNKSH+AAYAL++YYTA+LK
Sbjct: 714  KAEEMAEHRELFRQGAAKNGLTAEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLK 773

Query: 768  VHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREF---TVHEGR--- 821
             H P EFMAA ++  M + DK+      C    + VL P+V +S   F      +G+   
Sbjct: 774  AHHPAEFMAANMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAEPDGKRSK 833

Query: 822  -IVFGLGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACD 880
             I +GLG IK  G  AI EI+ AREE GP+  + D C RV+ R V +R +E LI+ GA D
Sbjct: 834  TIRYGLGAIKGSGQNAIEEILRAREE-GPFIDIFDFCNRVDRRIVNRRTVEALIRAGAFD 892

Query: 881  CLGCTRAGMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEW 940
             L   RA ++AS+   +  A++     ++ Q  LF M        P  G +  ++  PEW
Sbjct: 893  TLHANRAQLIASVSLAMEAAEQ--ASANALQAGLFDM-----GDAPSQGHELVDE--PEW 943

Query: 941  PDDQKLRFEKEALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLKE 1000
            P+ +KL+ EK ALGF+L+ H    Y+ E+ R     + E ++   G +   A ++ +L+ 
Sbjct: 944  PEKKKLQEEKAALGFYLSGHLFDAYKNEVRRFVRQKIGELKE---GRDKLVAGVIASLRT 1000

Query: 1001 LMTKKGQRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLLEGTLDKKADDGNGGQ 1060
             MT++G +M  A ++D T   EV  F E F   ++L K D+ L+++G     A  G    
Sbjct: 1001 QMTQRG-KMLIALLDDGTGQCEVTVFNETFEAHKQLFKEDELLVVQGQARNDAFTGG--- 1056

Query: 1061 GQGGDDEEAAPRDIKIMGAKVMPLAMACCSSDEPVIVELDTRRMSADYLAGLRAILEKH 1119
                         I+     VM L  A C   E V V+++    +AD LA LR +LE H
Sbjct: 1057 -------------IRFTVDTVMDLGRARCRYAEAVKVQMNG---NADALA-LRRVLEAH 1098