Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1158 a.a., DNA polymerase III subunit alpha (RefSeq) from Shewanella sp. ANA-3

 Score =  875 bits (2261), Expect = 0.0
 Identities = 497/1170 (42%), Positives = 714/1170 (61%), Gaps = 56/1170 (4%)

Query: 1    MSD--FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSF 58
            MSD  FVHL  H+++S+ DG  ++K + A+ +  GM A A+TD  NL G   FY  C   
Sbjct: 1    MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGA 60

Query: 59   GIKPIIGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTEGFHYKP 118
            GIKPIIG + ++          EF      L ++A NN+GY NL +++++ +  G H + 
Sbjct: 61   GIKPIIGADFWMQVPGFD---GEFCA----LTIIAMNNDGYQNLTQIISQAYLRG-HVQG 112

Query: 119  RV--DKELLREYSDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQS 176
            RV  D+E L  Y++G++ LS    G+V + L+K       +  + Y   F GR+YLEL  
Sbjct: 113  RVVIDQEWLVTYNEGILLLSGGREGDVGKALLKGNNTQVESLCEFYQQHFEGRYYLELLR 172

Query: 177  NGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMR 236
             G  ++E      + LA    +P+VATN   +L   D E+H+I + I    T+ DP+R +
Sbjct: 173  TGRTDEERYLHMAVGLAQEKGIPVVATNQVVFLKPEDFESHEIRVAIHDGFTLADPRRPK 232

Query: 237  FETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEG-MTLDT 295
              + + Y +S EEM + FA +P A+ NT  IA+ CN+ +   +YF P +  P G M+++ 
Sbjct: 233  KYSEQQYLRSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNF--PTGDMSIED 290

Query: 296  EFQRLAEEGLKKRLE-KHPDRDTIDHKA--YWDRLEWELKVITDMGFPGYFLIVQDFINW 352
                 +++GL++RLE   PD      +   Y +RL+ ELKVI  MGFPGYFLIV +FI W
Sbjct: 291  YLVDCSKKGLEERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQW 350

Query: 353  AKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERR 412
             K+NGIPVGPGRGS AGSLVA++L+IT+LDP+ +DLLFERFLN ERVSMPD DVDFC  R
Sbjct: 351  GKDNGIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDR 410

Query: 413  RTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMT 472
            R EVI +VAE YG ++VSQI TFG M AKAV+RDVGR LG  +G  DRI+KLIP +  MT
Sbjct: 411  RDEVIDHVAELYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMT 470

Query: 473  IKKALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLYK 532
            + KA E EP L   Y  D  ++ L+D+  +LEG++R+A  HA GVVI+   ++++ PLY 
Sbjct: 471  LAKAFEVEPALQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYC 530

Query: 533  GKKGET-VTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEI----TRQGKTPPDLDTLS 587
              +G+  VTQFD   VE  GLVKFDFLGLRT+T+V  AL+ I     + G+ P  ++ + 
Sbjct: 531  DAEGKNPVTQFDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIP 590

Query: 588  LDDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDE 647
            LDD  ++ L  R +T  VFQ+ES GM+  ++ L+P CF+D+IA++AL+RPGPL SGMVD 
Sbjct: 591  LDDPASFRLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN 650

Query: 648  FIKRKHGEVPVTYP-----VPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRR 702
            FI+RKHG   V+YP       SL+  L PTYG+I+YQEQVMQIAQ++  YTLGGAD+LRR
Sbjct: 651  FIERKHGREEVSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRR 710

Query: 703  AMGKKIAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYY 762
            AMGKK  E MA++R  F +GA KN +  E A +IFDL+EKFA YGFNKSHSAAYAL+SY 
Sbjct: 711  AMGKKKPEEMAKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770

Query: 763  TAFLKVHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEG-R 821
            T +LK HFP +FMAA+++++M N DK++  V  C+ M + ++ P+V     +FTV +  R
Sbjct: 771  TLWLKTHFPSQFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFTVDDDLR 830

Query: 822  IVFGLGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDC 881
            IV+G+G IK VG+  +  I++AR++ GP+  L D C R++L+K+ KRVIE LI  GA D 
Sbjct: 831  IVYGIGAIKGVGEGPVESILEARKD-GPFKDLFDFCARIDLKKLNKRVIEKLICAGALDA 889

Query: 882  LGCTRAGMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQ--TAPE 939
            LG  RA M+A+L   ++ A +  K     Q  +F ++  +P+       D ++Q      
Sbjct: 890  LGPHRASMMATLPEAISAADQHAKAEAIGQHDMFGLLNSDPE-------DSKQQFVECTP 942

Query: 940  WPDDQKLRFEKEALGFFLTSHPLQPYRKELFRLRLTPLEEARDMPPGAEIRTAVLVTTLK 999
            WPD   L  E+E LG +LT HP+  Y KEL       L++      G  ++ A LV   +
Sbjct: 943  WPDKIWLEGERETLGLYLTGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATR 1002

Query: 1000 ELMTKKGQRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLLEGTLDKKADDGNGG 1059
             ++TK+G +M    ++D +A  EV+ F E F +   LL+ D+ L+ EG  +   DD  GG
Sbjct: 1003 VMLTKRGSKMGLLTLDDKSARLEVMLFTEAFEKFNHLLEKDRILICEG--EVSFDDFAGG 1060

Query: 1060 QGQGGDDEEAAPRDIKIMGAKVMPLAMACCSSDEPVIVELDTRRMSADYLAGL-RAILEK 1118
                           ++    ++ ++ A       + ++LD  +++   L  + ++I   
Sbjct: 1061 N--------------RMTARNIIDISEARSHFASALEIDLDASQLTPSVLESIEQSISPW 1106

Query: 1119 HKGTVPVNVHMVVDESLCLLQLGPRWTVQP 1148
              G VPV ++    ++    +L   W V P
Sbjct: 1107 RNGAVPVVINYSQAQAKGQFRLAENWRVNP 1136