Pairwise Alignments

Query, 347 a.a., DNA-directed RNA polymerase, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

 Score =  235 bits (599), Expect = 1e-66
 Identities = 133/324 (41%), Positives = 204/324 (62%), Gaps = 14/324 (4%)

Query: 16  SELVKPEQISRDGEVSDTMYGKFVCEPLERGYATTIGNAMRRVLLSSLQGAAFVAVKISG 75
           +E +KP  +  D E   T + K   EPLERG+  T+GNA+RR+LLSS+ G A   V+I G
Sbjct: 6   TEFLKPRLV--DIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEG 63

Query: 76  VQHEFTTIPGVLEDVTDVVLNLK--QVRLAMDTEEPQYLELKVDKRGAITAGDVRTNQHV 133
           V HE++T  GV ED+ +++LNLK   VR+A   +E  ++ L     G + AGD+  +  V
Sbjct: 64  VLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDE-VFITLNKSGSGPVVAGDITHDGDV 122

Query: 134 MVLNPDQHIATLTED-IELTFELEVRMGKGYVPADMHEGLSEE---IGLIKLDASFSPVR 189
            ++NP+  I  LT D   +   ++V  G+GYVPA       E+   IG + +DA+FSPV 
Sbjct: 123 EIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPVD 182

Query: 190 KVAYTVEQARVGQMTNYDKLILEVWTDGSVSPEDAIAYSAKIIKDQISVFINF-DERISG 248
           K+AY+VE ARV Q T+ DKL++++ T+G++ PE+AI  +A I+ +Q+  F++  D R+  
Sbjct: 183 KIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRVPE 242

Query: 249 ENSNGSADSGEFNEHLFKSIDELELSVRATNCLKSANIALVGELVQKSENEMLKTKNFGR 308
           E      +  EF+  L + +D+LEL+VR+ NCLK+  I  +G+LVQ++E E+LKT N G+
Sbjct: 243 EKE----EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 298

Query: 309 KSLDEIRRVLGDMGLDFGTKVDGF 332
           KSL EI+ VL   GL  G +++ +
Sbjct: 299 KSLTEIKDVLASRGLSLGMRLENW 322