Pairwise Alignments

Query, 524 a.a., bacterial type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 423 a.a., DNA uptake porin HofQ from Pantoea sp. MT58

 Score =  159 bits (403), Expect = 1e-43
 Identities = 118/436 (27%), Positives = 213/436 (48%), Gaps = 48/436 (11%)

Query: 84  PVTLKLHNVDVGVALRSLAAAANTSIIVSPGVKGTASINVNRVPWEDVFKGILASNALDF 143
           P++L   N  V   L++LA     +++++P V+G+ S+ ++ +PW      +     L  
Sbjct: 24  PLSLTFDNAPVERILQALADYQQFNLMIAPEVEGSLSLRLDNLPWHQALDLVARMAKLTL 83

Query: 144 AWRGELIQVMTLADKKAEVERELLETQRMAQQLKGRKVGPLVTSVIEVRYAEAAELKKNL 203
             +  ++ V   + ++A+ +    E Q   QQ+      PL    + +RYA A+E+  +L
Sbjct: 84  IEQDNVLLVYPESWQQAQQQARAAEQQAQLQQV------PLQQRAVTLRYASASEVHASL 137

Query: 204 EGFLSKDEQNKPV-GAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVE 262
              LS+ +      G+V VD  TN+L+++     L +    +  LD P  QI L AHIV 
Sbjct: 138 ---LSERQSLMTARGSVTVDKRTNALLLRDTAAALKETERWIRALDLPLEQIELSAHIVT 194

Query: 263 ATRDTARDLGIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVPVIPPGGLSGQ 322
            + +  ++LG++WG                    +G    TD      + +  P  LS  
Sbjct: 195 ISEEHLQELGVKWGLQ------------------AGDAAVTDILHHPRLDI--PLALSSP 234

Query: 323 GFGMNFPVNKAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMA 382
           G                S+G+    IGG +L+++LSAL+   ++ I++SP + T   Q A
Sbjct: 235 GI---------------SVGMALARIGGQLLDLELSALEQENQIEIIASPRLFTSHQQTA 279

Query: 383 FTENGEKVPY-VSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLT-RT 440
             + G ++PY VS    G   ++F++AVL +E+TP +     ++LK+++ ++    + RT
Sbjct: 280 SIKQGTEIPYEVSAGNSGATSIEFKEAVLGMEVTPTLSGNGRIQLKIRISQNMPGRSIRT 339

Query: 441 VEGNPFIIKKQT-ETTLIVQDGETVVISGLTKERSSTRRQGLPYLQDVEGIGALFGNDSK 499
            + N   I KQ  ET + V DG+T+ + G+ +++ S     +P L +V  IG LF   S+
Sbjct: 340 GDSNILSIDKQEIETQVTVSDGQTLALGGIFQQQRSRGENKVPLLGNVPLIGGLFRQQSE 399

Query: 500 ANKLEDVLIFITPAIL 515
             K  +++IFITP ++
Sbjct: 400 QRKKRELVIFITPRLV 415