Pairwise Alignments

Query, 524 a.a., bacterial type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 702 a.a., general secretion pathway protein D (RefSeq) from Shewanella sp. ANA-3

 Score =  120 bits (301), Expect = 2e-31
 Identities = 99/352 (28%), Positives = 174/352 (49%), Gaps = 31/352 (8%)

Query: 186 TSVIEVRYAEAAELKKNLEGFLSKDEQNKPVGA-----------VVVDTHTNSLIVQAVE 234
           T V  +RYA+A +L + L GF  K E  K   A           ++  T TN+L++ A  
Sbjct: 270 TKVRYLRYAKAEDLVEVLTGFAQKLEGEKDPSAQAGGKRRNEINIMAHTDTNALVISAEP 329

Query: 235 DDLSKIITLVNNLDKPRAQILLKAHIVEATRDTARDLGIQWGGVGRSGNMGDGNRMWVTP 294
           D +  I +++N LD  RAQ+L++A IVE         G+QW      G   +     +  
Sbjct: 330 DQMRTIESVINQLDIRRAQVLVEAIIVEVAEGDNVGFGVQWAAKADGGTQFNNLGPTIGE 389

Query: 295 GGSGPTKPTDPQAGGGVPVIPPGGLSGQGFGMNFPVNKAGKT----AMGSL-GLMFGTIG 349
            G+G  +  D +   G  +  P   +G+  G N P  K   T    A+G + G+ +G   
Sbjct: 390 IGAGIWQAQDKE---GTYITNPS--TGEVIGKN-PDTKGDVTLLAQALGKVNGMAWGVAM 443

Query: 350 GNMLEVQLSALQDNGKLNILSSPSISTLDNQMAFTENGEKVPYV------STNAQGDREV 403
           G+     + A+  +   N+L++PSI+TLDNQ A    G++VP +      S N+   + V
Sbjct: 444 GD-FGALVQAVSADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTV 502

Query: 404 KFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTVEGNPFIIKKQTETTLIVQDGET 463
           + ++  ++L++ P + + + +KL ++ +   V+    V+ + F  ++ T TT++   G+ 
Sbjct: 503 ERKEVGVKLKVVPQINEGNAVKLAIEQEVSGVNGNTGVDIS-FATRRLT-TTVMADSGQI 560

Query: 464 VVISGLTKERSSTRRQGLPYLQDVEGIGALFGNDSKANKLEDVLIFITPAIL 515
           VV+ GL  E      Q +P+L D+  +G LF + S     ++++IFI P I+
Sbjct: 561 VVLGGLINEEVQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTII 612