Pairwise Alignments

Query, 573 a.a., general secretion pathway protein E, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

 Score =  374 bits (961), Expect = e-108
 Identities = 197/393 (50%), Positives = 268/393 (68%), Gaps = 12/393 (3%)

Query: 175 EELASQADLAPVVRLVNSILAQAVREGASDVHISPEKDSRQVRFRIDGKLREAPAPPKNV 234
           E+L    D AP+++L+N++L +A++EGASD+HI   + +  +RFR+DG LRE  AP + +
Sbjct: 112 EDLLESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKL 171

Query: 235 APAMVSRLKILGNMDIAVTRVPQDGRFTMNLDNREINVRVSSIPTIYGENMVLRLLDMSG 294
           +  +VSR+K++  +DIA  RVPQDGR ++ +  R ++VRVS++P+ +GE +V+RLLD + 
Sbjct: 172 SSLLVSRVKVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNA 231

Query: 295 RDYTLDQLGMEQTDHTVIKRVIHKPYGMILSTGPTGSGKSTSLYAILKSINTPEINIITL 354
               L  LGM   +H   +R+I +P+G+IL TGPTGSGKST+LYA L+ +N+ E NI+T+
Sbjct: 232 TRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 291

Query: 355 EDPVEYRIGGIRQVQLNRKAGMTFASGLRSILRQDPDVVMVGEIRDAETASIAVQAALTG 414
           EDP+E+ I GI Q Q+N +  MTFA GLR+ILRQDPDVVMVGEIRD ETA IAVQA+LTG
Sbjct: 292 EDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTG 351

Query: 415 HLVLSTLHTNDAAGAVTRLIDMGIEPFLVSSVMLASFAQRLVRRVCPNCAEPYDPPHAAL 474
           HLV+STLHTN A GAVTRL DMGIEPFL+SS +L   AQRLVR +CP+C EPY+      
Sbjct: 352 HLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQR 411

Query: 475 AAFGIDPAEGHDGRSRFLKGRGCFHCAHTGYRGRTGLFEILPMVPEIQELVVRRSSTQVI 534
             F     E         +  GC  C H GYRGRTG+ E+L +   +QEL+   +  Q  
Sbjct: 412 KLFDSKKKE----PLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQ-- 465

Query: 535 ANTAIEAGLMRT---LVQDAALKVRAGITTVEE 564
              A+E  +  T   +  D   KVR GIT++EE
Sbjct: 466 ---AMEKHIRATTPSIRDDGLDKVRQGITSLEE 495