Pairwise Alignments

Query, 573 a.a., general secretion pathway protein E, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 521 a.a., general secretion pathway protein E (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  363 bits (933), Expect = e-105
 Identities = 213/517 (41%), Positives = 305/517 (58%), Gaps = 19/517 (3%)

Query: 52  VATVSRQLRIDRYSPQDFPLSLNMAERLPLETAQKCNAVPLQQHGHVLVVAMTDPLDIDA 111
           ++ VS +L ++    + F  S    ERLP   A +   +        L +  T    + A
Sbjct: 12  LSLVSNELGLEAEGDEVFRSSSK--ERLPFAFAHRHQVILAYGDDGALNLFYTAHTPLAA 69

Query: 112 CDTIEFATNSEVEPVICTEQEFN-QLFSAVYGMFTNLDGVIESLG---DLHTATAAKTET 167
                  +  ++  V+    +F  +L  A     +    ++E +G   DL T      +T
Sbjct: 70  MLEARRYSGVDLPLVLLEPNKFEVKLTQAYQANSSEAQQLMEDIGNEMDLFTLAEELPQT 129

Query: 168 EDRDVALEELASQADLAPVVRLVNSILAQAVREGASDVHISPEKDSRQVRFRIDGKLREA 227
           ED       L    D AP+++L+N++L++A++E ASD+HI   +    VRFRIDG L+E 
Sbjct: 130 ED-------LLEGDDDAPIIKLINALLSEAIKEEASDIHIETYEKQLVVRFRIDGVLKEV 182

Query: 228 PAPPKNVAPAMVSRLKILGNMDIAVTRVPQDGRFTMNLDNREINVRVSSIPTIYGENMVL 287
             P + ++  +VSR+K++  +DIA  RVPQDGR ++ +  R ++VRVS++P+ +GE +VL
Sbjct: 183 LKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIAGRAVDVRVSTMPSSHGERVVL 242

Query: 288 RLLDMSGRDYTLDQLGMEQTDHTVIKRVIHKPYGMILSTGPTGSGKSTSLYAILKSINTP 347
           RLLD +  +  L QLGM  +       +I +P+G+IL TGPTGSGKST+LYA L  IN+ 
Sbjct: 243 RLLDKNAGNLDLKQLGMTDSIRAKFDELIRRPHGIILVTGPTGSGKSTTLYAGLTEINSK 302

Query: 348 EINIITLEDPVEYRIGGIRQVQLNRKAGMTFASGLRSILRQDPDVVMVGEIRDAETASIA 407
           + NI+T+EDP+EY + GI Q Q+N KA MTFA GLR+ILRQDPDVVM+GEIRD ETA IA
Sbjct: 303 DTNILTVEDPIEYELEGIGQTQVNTKADMTFARGLRAILRQDPDVVMIGEIRDLETAQIA 362

Query: 408 VQAALTGHLVLSTLHTNDAAGAVTRLIDMGIEPFLVSSVMLASFAQRLVRRVCPNCAEPY 467
           VQA+LTGHLV+STLHTN A+GA+TRL DMG+EPFLVSS +L   AQRL+R +CP C   +
Sbjct: 363 VQASLTGHLVISTLHTNTASGAITRLQDMGVEPFLVSSSLLGVLAQRLIRTLCPKCKTEH 422

Query: 468 DPPHAALAAFGIDPAEGHDGRSRFLKGRGCFHCAHTGYRGRTGLFEILPMVPEIQELVVR 527
            P        GI      D      +  GC  C  +GYRGRTG+ E+L +   ++EL+  
Sbjct: 423 TPDERERELLGITA----DDPRHIYRANGCKACGGSGYRGRTGIHELLLVDDNVRELIHG 478

Query: 528 RSSTQVIANTAIEAGLMRTLVQDAALKVRAGITTVEE 564
                 I     ++  + ++  D   KV  GITT+EE
Sbjct: 479 GRGELAIEKYIRQS--VPSIRHDGMSKVLLGITTLEE 513