Pairwise Alignments

Query, 408 a.a., general secretion pathway protein F, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 423 a.a., type IV pilus biogenesis protein PilC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  213 bits (542), Expect = 9e-60
 Identities = 127/408 (31%), Positives = 214/408 (52%), Gaps = 14/408 (3%)

Query: 3   SFSYTARNENGVKMEGVIDAESTEAARAILFSRGYVPLEVKAGAGGGFSLGLGALADALS 62
           +F +   N +G K  G +   S    R+ L S+G  P  V+  +   F LG         
Sbjct: 25  TFEWKGVNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRKQSAALFKLGD-------P 77

Query: 63  PIPPKELILFTKQFRTLFQAGIPITQLLQVLQNQTEHKRLKAIAAEMSQAIMGGATLYDA 122
            I P ++ + T+Q  T+  AG+P+   +++L    E  +++ + A +   I  G  L DA
Sbjct: 78  KITPMDIAMVTRQIATMLAAGVPLVTTIELLGRGHEKVKMRELLATILSEIQSGIPLSDA 137

Query: 123 FRAHPKVFSELYCSMMRAGEASGALGEVMDRLVYLLEHEHKIRSDIKSALRYPKMVMGAL 182
            R H + F +LY  ++ AGE SG+L  V DR+    E    ++S IK A+ YP  V+   
Sbjct: 138 LRPHRRYFDDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVIVA 197

Query: 183 AVAFFVLLNLVIPKFVLIFSQARITLPWPTKIAIGMHYVFSTYWYVVLAVVVAGTVAYKY 242
            +   +LL  V+P+F  IF      LP  T++ + +     + WY+ L  +VAG   +  
Sbjct: 198 ILVTALLLLFVVPQFEDIFKGFGAELPAFTQLVLQISRGLQSSWYIFLGAIVAGVFLF-- 255

Query: 243 WVRTE-DGRYWRDRL---VLRLPGVGPVIQKSVMARFASIFAILQSSGVSVLDALDVLNN 298
            VR   + +  RDR+   VL++P +GP++ K  MARFA   A   ++GV ++D L+    
Sbjct: 256 -VRAHRNSQIVRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAG 314

Query: 299 TIGNAAIAREFTRIQDQLREGRGIAEPLRTARFFTPLVVNMVAIGEESGSLDAMLNDVAR 358
             GNA   +   +I+ ++  G  +   +RT   F  +++ MV IGEESGSLD MLN V+ 
Sbjct: 315 ASGNAVYRKAILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVST 374

Query: 359 HYDEEVEYAVAGMAEAIGPVLIVALAAVVGFFALAIFMPMWDLTQMAG 406
            Y+ +V+ AV G++  I P+++V +  VVG   +A+++P++ + ++ G
Sbjct: 375 IYEMQVDDAVDGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKVVG 422