Pairwise Alignments

Query, 879 a.a., alanyl-tRNA synthetase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 873 a.a., alanine--tRNA ligase from Pseudomonas fluorescens FW300-N2C3

 Score =  805 bits (2079), Expect = 0.0
 Identities = 419/876 (47%), Positives = 580/876 (66%), Gaps = 25/876 (2%)

Query: 6   EIRRRFLEFYKAHGHEAVRSSSLVPKDDPSLLFTNAGMVQFKKIFLGQEKRAYSRATTSQ 65
           EIR  FL F++  GH  V SSSL+P +DP+LLFTNAGM QFK  FLGQEKRAY+RA +SQ
Sbjct: 5   EIREAFLRFFEEQGHTRVASSSLIPGNDPTLLFTNAGMNQFKDCFLGQEKRAYTRAVSSQ 64

Query: 66  KCLRVGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEDAIKFAWKFLTEE--LKLPKE 123
           KC+R GGKHNDLENVG TARHHTFFEMLGNFSFGDYFK DAI FAW FLT +  L LPKE
Sbjct: 65  KCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAITFAWTFLTSDKWLNLPKE 124

Query: 124 RLYATVFRDDDEAEQLWLKHSDIPAERIYRMGEK-------DNFWSMGDTGPCGPCSEIL 176
           +L+ TV+  DDEA  +W K   +PAER+ R+G+        DNFW+MGDTGPCGPC+EI 
Sbjct: 125 KLWVTVYATDDEAYDIWTKEVGVPAERMVRIGDNKGAPYASDNFWTMGDTGPCGPCTEIF 184

Query: 177 IDQGEHMTCGPDCGIGKCDCDRFLEIWNLVFMQYDQDATGKREPLPKPSIDTGMGLERIT 236
            D G  +  GP  G  + D DR++EIWN VFMQ+++ A G   PLP PS+DTGMGLERI+
Sbjct: 185 YDHGADIWGGPP-GSPEEDGDRYIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERIS 243

Query: 237 AVCQGVFSNFDTDIFQAIIQYTCGLANVSYRSDDETDTALRVIADHSRAIAFMITDGILP 296
           AV Q V SN++ D+FQ+++  +      +    ++   +L+V+ADH R+  F+I DG+LP
Sbjct: 244 AVLQHVHSNYEIDLFQSLLSASAKAIGCT----NDNQASLKVVADHIRSCGFLIADGVLP 299

Query: 297 SNEGRGYVLRRLIRRAYRFGRLIGLTDTFLHKTALKVVDIMGDDYPELRENSDFMARVVR 356
           SNEGRGYVLRR+IRRA R G  +G   +F ++    +   MGD +PEL+     + RV++
Sbjct: 300 SNEGRGYVLRRIIRRACRHGNKLGAKGSFFYQIVAALAAEMGDAFPELKSQQAHIERVLK 359

Query: 357 EEEDRFNRTLDKGLSMLEDELATLSASGAAHVPGDIAFRLYDTFGFPLDIVNDIAEKRGF 416
            EE++F +TL++GL +LE +LA L  +    VPGD+ F+LYDT+GFP+D+  DIA +R  
Sbjct: 360 AEEEQFAKTLEQGLKILEQDLAELKGNV---VPGDVVFKLYDTYGFPMDLTGDIARERNL 416

Query: 417 SVDEDGFKALMKEQKERAKAAWKGSGEKDIASRFQPLLEEGMRSEFIGYDHLCGEGRIVA 476
           ++DE+GF+  M+ Q+ RA++A            +  L++  + +EF GY    G  +IVA
Sbjct: 417 TLDEEGFEREMEAQRVRARSA------SSFGMDYNSLVKVDVATEFTGYAGTTGSAKIVA 470

Query: 477 LMDEHALAVERLAAGQKGYLVTNRTPFYGASGGQSGDIGTIASPSGKVRVVDTIKPSPEL 536
           +  +   +V+ L+ GQ+G +V ++TPFY  SGGQ GD G + + S +  V DT K     
Sbjct: 471 IYKD-GQSVDILSEGQEGVIVLDKTPFYAESGGQIGDSGYLQAGSSRFDVRDTTKTGGAF 529

Query: 537 VVHHVEAVEGDILLDQEVDLTVTEDDRVASARNHTCTHLLHAALRRVLGDHVKQAGSLVA 596
           + HH     G +++   V   V  + R A++ NH+ THLLHAALR+VLG+HV+Q GSLV 
Sbjct: 530 L-HHGVLASGSLMIAAPVAAHVDAEVRHATSLNHSATHLLHAALRQVLGEHVQQKGSLVD 588

Query: 597 PDRLRFDFTHIAPMTPEELAAVEREVNRVIMADIPLETDHMHYDDAVKRGAMALFGEKYG 656
             RLRFDF+H   + PE+L A+E  VN  I  + P+ET+    + A ++GAMALFGEKYG
Sbjct: 589 SQRLRFDFSHFEAIKPEQLKALEEIVNAEIRKNSPVETEETDIETAKRKGAMALFGEKYG 648

Query: 657 DEVRVVAIADESVELCGGTHLRATGQAGLFLIVSESGVAAGVRRIEALTGWNAMHAVLAQ 716
           D VRV+++ D SVELCGG H   TG  GL  I+SE GVA+GVRRIEA+TG  A+  + A 
Sbjct: 649 DSVRVLSMGDFSVELCGGIHANRTGDIGLMKIISEGGVASGVRRIEAVTGAAALAYLNAA 708

Query: 717 RSEQAQLSAMLKARPGEIVSRVESLQKENRTLRKDMERAAAQATSGQGRNIMDEATDVAG 776
             +  + + ++K     ++ ++ ++ + NR L K +E+  A+A S  G ++  +A DV G
Sbjct: 709 EEQLKEAATLIKGSRDNLIDKLSAVLERNRLLEKQLEQLQAKAASAAGDDLSAQAVDVKG 768

Query: 777 VKLLAAKVEVPNVKALRDLMDDVRSKLVSGIACLAAVDGDKVQLIIAVSKDLQTRFTAPQ 836
           VK+LA +++  + KAL  L+D +++KL   +  L +V  +KV L+  V+KDL  +  A  
Sbjct: 769 VKVLAVRLDGQDGKALLALVDQLKNKLGRAVILLGSVHEEKVVLVAGVTKDLTGQLKAGD 828

Query: 837 LIKDVAAEVGGSGGGRPDMAQAGGTNPAGIDAAFAK 872
           L+K  AA VGG GGGRPDMAQ GGT+   +DAA A+
Sbjct: 829 LMKQAAAAVGGKGGGRPDMAQGGGTDVGALDAALAQ 864