Pairwise Alignments

Query, 457 a.a., tRNA modification GTPase TrmE (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 453 a.a., tRNA modification GTPase TrmE (RefSeq) from Shewanella amazonensis SB2B

 Score =  246 bits (629), Expect = 8e-70
 Identities = 166/461 (36%), Positives = 253/461 (54%), Gaps = 19/461 (4%)

Query: 5   DTIAAIATPLGQGGIGIIRISGPASLEVLRALF-RPSSSRFGGFRPWTLHHGTITDGCDP 63
           DTI A AT  G+GG+GIIR+SG  + +V   L       R+  F  +    G++      
Sbjct: 4   DTIVAQATAPGRGGVGIIRVSGKLASDVAHTLLGHLPKPRYADFCDFKAADGSV------ 57

Query: 64  LDDVLAVHMPGPRTFTGEDVSEIHCHGGSGVLAAVLEACVR-HGARYAERGEFTRRAFLN 122
           +D  +A+   GP +FTGEDV E+  HGG  V+  ++ A ++  G R A  GEF+ +AF+N
Sbjct: 58  IDQGIALFFKGPNSFTGEDVLELQGHGGQVVMDMLIRAVLKVKGVRIARPGEFSEQAFMN 117

Query: 123 GRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLDALRMQLCVAVDFPE 182
            ++DLTQAEA+A++I A S +  + A   L G    +V  L  ++  LR+ +  A+DFP+
Sbjct: 118 DKLDLTQAEAIADLIDATSEQAAKSALHSLQGEFSTQVHTLVDKITNLRLYVEAAIDFPD 177

Query: 183 EEVECLAPEAFLAEIEAVRQGVVELSAGYARTRCWQDGALVVLAGQVNAGKSSLMNALLG 242
           EEV+ L+     A + A+   + E+ A   +    ++G  VV+AG+ NAGKSSL+NAL G
Sbjct: 178 EEVDFLSDGKIAAALYAIIDQLDEVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAG 237

Query: 243 RRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETGDIVEQEGVRMSRDLVAQADL 302
           +  AIVTD+ GTTRD + E ++L G+ + + DTAGLR+T D VE+ G+  +   +A AD 
Sbjct: 238 KESAIVTDIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDEVERIGIERAWSEIASADR 297

Query: 303 VLLVTDATQGLQGPELELL-----RHAGPERVLVVFNKTDLLEGRILPSTPEGCRSVH-V 356
           VL + D T        E+      R      V VV NK D L G  L +T E   SV+ +
Sbjct: 298 VLFMVDGTDTAAVDPHEIWPDFIDRLPKAMGVTVVRNKAD-LTGEPLEATEEQGYSVYRI 356

Query: 357 AAASGDGVESLVTAIRAAVLAATGAGEPEAGELAPNMRQAAALDKAATILDELAGDIRAH 416
           +A +G GV++L   +++ +    G      G      R   AL++A+  L      +  +
Sbjct: 357 SAKTGLGVDALKQHLKSLM----GYQSNLEGGFIARRRHLEALEQASEHLQLGKVQLEVY 412

Query: 417 VPYDLCGVRLDGACAALMDVTGQSTPEAILDAIFASFCIGK 457
           +  +L    L  A  AL ++TG+ T + +L  IF+SFCIGK
Sbjct: 413 LAGELLAEELRMAQQALSEITGEFTSDDLLGKIFSSFCIGK 453