Pairwise Alignments

Query, 457 a.a., tRNA modification GTPase TrmE (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 441 a.a., tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE from Rhodopseudomonas palustris CGA009

 Score =  210 bits (535), Expect = 7e-59
 Identities = 165/461 (35%), Positives = 236/461 (51%), Gaps = 31/461 (6%)

Query: 4   DDTIAAIATPLGQGGIGIIRISGPASLEVLRALFRPSSSRFGGFRP--WTLHHGTITDGC 61
           D TI A+AT      I I+R+SG  + EVL AL        G   P    +     +   
Sbjct: 5   DQTIFALATGPLPSAIAIVRVSGSRAGEVLTALT-------GSLPPPRRAVRCDLRSRDG 57

Query: 62  DPLDDVLAVHMPGPRTFTGEDVSEIHCHGGSGVLAAVLEACVR-HGARYAERGEFTRRAF 120
           D +DD +A+  P P + TGEDV+E+H HG   V AA+++      G R AE GEFTRR F
Sbjct: 58  DLIDDGVALWFPTPASATGEDVAELHIHGSRAVAAALIKTLSAFEGVRPAEPGEFTRRGF 117

Query: 121 LNGRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLDALRMQLCVAVDF 180
            NG++DLT+AE + ++I A +    R A  +L G+LG R    R ++      +   +DF
Sbjct: 118 ENGKLDLTEAEGLDDLIHADTDAQRRQALRQLGGVLGDRARRWRDQIIEALALVEAGIDF 177

Query: 181 PEE---EVECLAP-EAFLAEIEAVRQGVVELSAGYARTRCWQDGALVVLAGQVNAGKSSL 236
            +E     E + P  A +AE+ A    + E+ A   R    +DG +V +AG  N GKS+L
Sbjct: 178 SDEGDVADELMGPARAKIAELSAE---IAEVLAEQGRGEKLRDGMVVAIAGPPNVGKSTL 234

Query: 237 MNALLGRRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETGDIVEQEGVRMSRDL 296
           +N L  R  AIV+   GTTRD IE  L+L G  + + DTAGLR++ D VEQEGVR +R  
Sbjct: 235 INRLARREVAIVSPHAGTTRDVIEIQLDLDGYPVTVIDTAGLRDSDDPVEQEGVRRARSR 294

Query: 297 VAQADLVLLVTDATQGLQGPELELLRHAGPERVLVVFNKTDLLEGRILPSTPEGCRSVHV 356
            A ADLVL ++ AT     P+++     GPE V  V NK DL  G +  S P       +
Sbjct: 295 AAAADLVLWLSTATDA-SDPDVK-----GPE-VWRVRNKIDLATGEVAESGPSQ-PVFRI 346

Query: 357 AAASGDGVESLVTAIRAAVLAATGAGEPEAGELAPNMRQAAALDKAATILDELAGDIRAH 416
           +AA+G+G   L+  +     AA   G  EAG +  +  +    D AA++   L   +   
Sbjct: 347 SAATGEGFADLLRELTR--FAAQYFGSAEAGLITRDRHRRLLADAAASLTRSLVPGLAE- 403

Query: 417 VPYDLCGVRLDGACAALMDVTGQSTPEAILDAIFASFCIGK 457
              ++    L  +  +L  + G+   E +L  IF  FCIGK
Sbjct: 404 ---EIVAEELRASAHSLGRLLGRVDVEDVLGEIFGRFCIGK 441