Pairwise Alignments

Query, 457 a.a., tRNA modification GTPase TrmE (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 453 a.a., tRNA modification GTPase TrmE (RefSeq) from Shewanella sp. ANA-3

 Score =  235 bits (600), Expect = 2e-66
 Identities = 159/460 (34%), Positives = 247/460 (53%), Gaps = 17/460 (3%)

Query: 5   DTIAAIATPLGQGGIGIIRISGPASLEVLRALF-RPSSSRFGGFRPWTLHHGTITDGCDP 63
           DTI A AT  G+GG+GIIRISG  + +V  A+       R+  +  +    G +      
Sbjct: 4   DTIVAQATAPGRGGVGIIRISGDKATDVAMAVLGHLPKPRYADYCDFKNASGQV------ 57

Query: 64  LDDVLAVHMPGPRTFTGEDVSEIHCHGGSGVLAAVLEACVR-HGARYAERGEFTRRAFLN 122
           +D  +A+   GP +FTGEDV E+  HGG  VL  +++  +   G R A+ GEF+ +AF+N
Sbjct: 58  IDQGIALFFKGPNSFTGEDVLELQGHGGQIVLDMLIKRVLEVEGIRIAKPGEFSEQAFMN 117

Query: 123 GRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLDALRMQLCVAVDFPE 182
            ++DLTQAEA+A++I A S +  + A   L G   + V  L  ++  LR+ +  A+DFP+
Sbjct: 118 DKLDLTQAEAIADLIDATSEQAAKSALQSLQGEFSKEVHELVDQVTHLRLYVEAAIDFPD 177

Query: 183 EEVECLAPEAFLAEIEAVRQGVVELSAGYARTRCWQDGALVVLAGQVNAGKSSLMNALLG 242
           EEV+ L+       +  +   +  + A   +    ++G  VV+AG+ NAGKSSL+NAL G
Sbjct: 178 EEVDFLSDGKIANALYKIIDKLSAVQASAKQGSIIREGMKVVIAGRPNAGKSSLLNALAG 237

Query: 243 RRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETGDIVEQEGVRMSRDLVAQADL 302
           +  AIVT++ GTTRD + E ++L G+ + + DTAGLR+T D VEQ G+  + + +  AD 
Sbjct: 238 KESAIVTEIAGTTRDVLREHIHLDGMPLHIIDTAGLRDTTDTVEQIGIERAWNEINSADR 297

Query: 303 VLLVTD--ATQGLQGPEL---ELLRHAGPERVLVVFNKTDLLEGRILPSTPEGCRSVHVA 357
           VL + D   T  +   ++    + R      V VV NK DL    +  +  +G     ++
Sbjct: 298 VLFMVDGTTTDAVDPHDIWPDFINRLPANLGVTVVRNKADLTGENLAMTEEKGYSVYRIS 357

Query: 358 AASGDGVESLVTAIRAAVLAATGAGEPEAGELAPNMRQAAALDKAATILDELAGDIRAHV 417
           A +G GVE L   +++ +    G      G      R   ALD AA+ L      +  ++
Sbjct: 358 AKTGLGVEELKQHLKSLM----GYKSNLEGGFIARRRHLEALDVAASHLQLGKEQLEIYL 413

Query: 418 PYDLCGVRLDGACAALMDVTGQSTPEAILDAIFASFCIGK 457
             +L    L  A  AL ++TG+ T + +L  IF+SFCIGK
Sbjct: 414 AGELLAEELRMAQLALSEITGRFTSDDLLGKIFSSFCIGK 453