Pairwise Alignments

Query, 534 a.a., inner membrane protein, 60 kDa (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 563 a.a., protein translocase subunit yidC from Pseudomonas syringae pv. syringae B728a

 Score =  292 bits (747), Expect = 3e-83
 Identities = 199/569 (34%), Positives = 291/569 (51%), Gaps = 52/569 (9%)

Query: 1   MENKRAIIAVVLSFIVLVGWGYLSEYMGW------------TPKSVPATEQKT--AASAP 46
           M+ KR I+ V L+ +  VG    ++  G             T   +P T   T  +ASA 
Sbjct: 1   MDIKRTILIVALAIVTYVGVLKWNQDYGQAAMPTQNVAASTTAPGIPDTAAGTNGSASAD 60

Query: 47  APSVVTSAPEAVTPAPAFSPSTGHEVTVTTPLYKAVLHSGGGVLRQFMLSRYHMGIDRDA 106
            PS   +A  A  P    + ++   + V T +    +   GG + Q  L  Y    DR  
Sbjct: 61  VPSANATANTAAAPLETPAVASKDLIHVKTDVLDLAIDPVGGDVVQLRLPLYPRRQDRPD 120

Query: 107 APVNLIESSAIR--VAPLGLL--------VNGQPSWNTGQWAFEGGDLNLADGQ-TGTLR 155
            P  L ++   R  +A  GL           G+P + + Q  ++     LADGQ T  + 
Sbjct: 121 VPFQLFDNGGERTFLAQSGLTGTNGPDARAAGRPVYTSTQKTYQ-----LADGQDTMVVD 175

Query: 156 FVGSVDGLRVVRELEFHAD------SYLVTEKLHLAPEGDAPRTARVGFTLGTTSLTPGE 209
              S +G+  ++   F         +Y+V  +      G+     +   +   +S T   
Sbjct: 176 LKFSENGVNYIKRFTFKRGLYDLVMTYVVDNQSAQPWSGNLFAQLKRDASSDPSSTTATG 235

Query: 210 SQYNLTRVAWFADGSFSEKSSTGDLEKGVL---IDGSIDWAGVMSNYFLAAVAPKD--TR 264
           +   L    W A   + +K S  D++KG +   + G   W   + +YF+ A  P    T 
Sbjct: 236 TATYLGAALWTAAEPY-KKVSMKDIDKGQVKETVQGG--WVAWLQHYFVTAWIPDHNATN 292

Query: 265 AVLKGKLEGGVYRVAVERPDQMVNPGNSDVIVCNYWFGPKERDLLNAAPNNLGKAIDLGW 324
           AV   K   G Y +    P   V PG         + GPK + +L      L   +D G+
Sbjct: 293 AVQTRKDSQGNYIIGFTSPTLSVAPGAQGETSATLYAGPKSQAVLKELSPGLELTVDYGF 352

Query: 325 FGFIARPLVTLLDFFYKYVGNYGTAIILLTILIKLVFWPLSHKSYKSMEQMKKLQPMLAK 384
             FIA+P+  LL   +  +GN+G +II+LT+LIK +F+PLS  SYKSM +M+ + P LA 
Sbjct: 353 LWFIAQPIFWLLQHIHAILGNWGWSIIVLTMLIKGLFFPLSAASYKSMARMRAVAPKLAL 412

Query: 385 VREKHADDREKMNEEMMRLYKTYKVNPAGGCLPMLVQIPVFFGLYQALLNAIELRHAPFI 444
           ++E+H DDR+KM++ MM LYK  K+NP GGCLP+LVQ+PVF  LY  LL ++E+R AP+ 
Sbjct: 413 LKEQHGDDRQKMSQAMMELYKKEKINPLGGCLPILVQMPVFLSLYWVLLESVEMRQAPW- 471

Query: 445 AHVPFTDIVWLADLSAKDPFYVTPLVMGATMFLQQKLTPPAGDPTQAKVMMFMPVVFTFL 504
                  I+W+ DLS KDPF++ P++MGATMF+QQ+L P   DP QAKVM  MP++FTF 
Sbjct: 472 -------ILWITDLSIKDPFFILPIIMGATMFIQQRLNPTPPDPMQAKVMKMMPIIFTFF 524

Query: 505 FLNFPSGLVVYWLCNNVLSIAQQWWILRK 533
           FL FP+GLV+YW+ NN LSIAQQ +I RK
Sbjct: 525 FLWFPAGLVLYWVVNNTLSIAQQAYITRK 553