Pairwise Alignments

Query, 534 a.a., inner membrane protein, 60 kDa (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 541 a.a., inner membrane protein, 60 kDa (RefSeq) from Shewanella amazonensis SB2B

 Score =  259 bits (663), Expect = 1e-73
 Identities = 180/543 (33%), Positives = 289/543 (53%), Gaps = 31/543 (5%)

Query: 1   MENKRAIIAVVLSFIVLVGWGYLSEYMGWTPKSVPATEQKTAASAPAPSVVTSAPEAVTP 60
           ME++R ++ + L F+  + W          PK  PATE   AA     ++ +  P A   
Sbjct: 1   MESQRNLLLIGLLFVSFLLWQQWESDKA--PK--PATEVTAAAQIHDQAINSDVPTADAG 56

Query: 61  APAFSPSTGHEVTVTTPLYKAVLHS-GGGVLRQFMLSRYHMGIDRDAAPVNLIE--SSAI 117
            PA   +T + + VTT   +  ++  GG ++   +L+  H     + AP  L+E  ++  
Sbjct: 57  VPATVAATQNLILVTTDQLEIQINPVGGDIVHAALLT--HKLEQNEEAPFVLLEQKNNFS 114

Query: 118 RVAPLGLLV-NGQPSWNTGQWAFEGGD--LNLADGQ-TGTLRFVGSVD-GLRVVRELEFH 172
            +A  GL+  +G  S  +G+  F        LADGQ T  +    + D G+   +   F 
Sbjct: 115 YIAQSGLIGRDGIDSAASGRAKFAAAADAYTLADGQDTLEVPLTLTTDAGVTFTKVFVFK 174

Query: 173 ADSYLVTEKLHLAPEGDAPRTARVGFTLGTTSLTPGESQYNLT--RVAWFADGSFS-EKS 229
              + V     +A    AP   ++   +  T +T  ES   +   R A F+      EK 
Sbjct: 175 RGQFDVGVDYRVANNSAAPVQVQMYGQIKQT-ITASESSMMMPTYRGAAFSTADVRYEKY 233

Query: 230 STGDLEKGVLIDGSID-WAGVMSNYFLAAVAPK--DTRAVLKGKLEGGVYRVAVERPDQM 286
           S  D+ K  L + ++  W  ++ +YF++A  P   D   +      GG+  +  +     
Sbjct: 234 SFDDMGKKDLEEPTLGGWVAMLQHYFVSAWVPAAADKNTLFTSVSAGGLANIGFKGSVHD 293

Query: 287 VNPGNSDVIVCNYWFGPKERDLLNAAPNNLGKAIDLGWFGFIARPLVTLLDFFYKYVGNY 346
           V PG ++ I   ++ GPK++  L+A  + L   +D G+  ++A P+  +L FF   V N+
Sbjct: 294 VAPGATETISATFYVGPKDQAALSALSDTLNLVVDYGFLWWLAVPIHWILMFFQSLVHNW 353

Query: 347 GTAIILLTILIKLVFWPLSHKSYKSMEQMKKLQPMLAKVREKHADDREKMNEEMMRLYKT 406
           G AIIL+T+ ++ + +PL+   Y SM +M+ LQP L  ++++  DDR+KM + MM LYK 
Sbjct: 354 GVAIILVTLTVRGLLYPLTKAQYVSMAKMRNLQPKLQDLKDRFGDDRQKMGQAMMELYKK 413

Query: 407 YKVNPAGGCLPMLVQIPVFFGLYQALLNAIELRHAPFIAHVPFTDIVWLADLSAKDPFYV 466
            KVNP GGCLP+L+Q+P+F  LY  LL ++ELRHAPF        ++W+ DLS +DP+YV
Sbjct: 414 EKVNPMGGCLPILLQMPIFIALYWVLLESVELRHAPF--------MLWIQDLSVQDPYYV 465

Query: 467 TPLVMGATMFLQQKLTP--PAGDPTQAKVMMFMPVVFTFLFLNFPSGLVVYWLCNNVLSI 524
            PL+MGA+M+  QK+ P  P  DP Q K++ +MP++FT  FL FP+GLV+YWL  N+++I
Sbjct: 466 LPLLMGASMWAMQKMQPMAPNMDPMQQKMLQWMPMIFTVFFLWFPAGLVLYWLVGNLVAI 525

Query: 525 AQQ 527
            QQ
Sbjct: 526 TQQ 528